Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00124 ATGATCCGTCTCAACGTTAAACTCCTTTCATCTCTTCTTTTAACTTTTGTTGTTGTTTCATGGACCTTGTTTTCTCCCTGCCATGCAAATAATTACGCGTTTATGGAAGGATTCACAAAGAGATCACCAAGCAATGCAAATATTTCAATATTAACATTAGCAGCAGAAAGAACGCGCAGGATGGACCCTAGTAATGATTTCAAGTACTATGATGGTGGATGGGATATAACCAATTCGCATTATATTCTGTCTGTTGCTTTTTCTGGTGCTCCTTTCGTGGCCATTGGTGTCCTATGGTTTGTGATTGTGGCATTATGCTTCACCATCATAATTTGTGTGTGTTGCTGTTGTTGCCGCAAGAGAAAGTCTAGGACAGATTACTCTCGAAAGACTTACACAATATCATTCATATTCCTCTCACTCTTCTTGATCATGACAATGATTGGAGGGACTTTTCTTTACAATGGACTGGAGAAATTCCAGGTTACTGCAAGGGATGTATCAGATATTCTGGTCTCAAGAGCAAATACAGTAGTTGATGTTATTCATAAGGTATTGGTCGATCTTGCAGCGGCTAAGAACATACAAGTGTCTAGTTTTGCTCTTCCATACGAGATCAAGCAAGGCATTGAAACGGCCGAACAATTTACCAATCAAACTGATTTTATTAAAAGTCAAGCAGAGGAAACGGCTAGAATCTCAATTGAACTCTTGGATGCTGTAAGTTACAGTCTTATCATTGTTGGCACTATGATGCTTTTCTTGACAACAATTGGCTTTATAATCTCAATATTTGGCTGGAGAGTGATCGTTTATATGTTGCTTTTCATTGGGTGGATCCTTGTTACATGCACTTATATATTGAGCGGCGTAACTTTGATTGTTCACAATGGAGTAGCTGACACATGTGTTGCAATGGAAGAATGGGTTGAACACCCACTAAATCATACAGCTCTAGGCAAACTTCTCCCATGCATGGATGAGAACGCAGCACAAAAAACCTTGGACATAACCAAAAACACCTCATCTCAAGTGGTCACTTTGGTTAATGCATTTCTAACTAATGTGGCCAACAAAGATATGCGTCCTCAACAAGATAGGGATATATACTACAATCAATCGGGTCCATCTATACCCCTCCTGTGCAATCCATTTTACCCTAACATGACTGAACGGCCATGTGCTGCATTAGAAGTAGACTTAAAGGGTGCACAAACAGCCTATGAAAATTTTATATGTGATACATCTCCAACTGGTGTTTGCATGAGCATGGGGAGATTGACTCCTTCCCTCTACTCAAAGGTTATGGTGGCTACCAACTTAAGTGACACACTACGTCTAAATGGTCCACTCTTGGCTCGTTTAGTGGATTGTTCCTTTGTTGTGGACACATTTGATGAAATAAGTAAGACAGATTGTCCACCATTTAGGCGATACAGCAATCAAGTCTTCATTTGCTTGGTGTTGGTTTCAGTTGCAGTTATGTTTTCTGTGATTTTGTGGGTAATTTTTGTCAGAGAAAGAAGACTTCAAATATCTTCAAAGAGTTTGAAGAGAACACACGTTCATGGGATGTAG 1578 0.3961 MIRLNVKLLSSLLLTFVVVSWTLFSPCHANNYAFMEGFTKRSPSNANISILTLAAERTRRMDPSNDFKYYDGGWDITNSHYILSVAFSGAPFVAIGVLWFVIVALCFTIIICVCCCCCRKRKSRTDYSRKTYTISFIFLSLFLIMTMIGGTFLYNGLEKFQVTARDVSDILVSRANTVVDVIHKVLVDLAAAKNIQVSSFALPYEIKQGIETAEQFTNQTDFIKSQAEETARISIELLDAVSYSLIIVGTMMLFLTTIGFIISIFGWRVIVYMLLFIGWILVTCTYILSGVTLIVHNGVADTCVAMEEWVEHPLNHTALGKLLPCMDENAAQKTLDITKNTSSQVVTLVNAFLTNVANKDMRPQQDRDIYYNQSGPSIPLLCNPFYPNMTERPCAALEVDLKGAQTAYENFICDTSPTGVCMSMGRLTPSLYSKVMVATNLSDTLRLNGPLLARLVDCSFVVDTFDEISKTDCPPFRRYSNQVFICLVLVSVAVMFSVILWVIFVRERRLQISSKSLKRTHVHGM 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00124 525 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 42 520 IPR040283 -
Cca11g00124 525 PANTHER TRANSMEMBRANE PROTEIN 42 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00124 Cca-Chr11 1472611 1477524 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00124 - - gmx:106799643 728.398
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02243 11 48692038 48694599 Cca11g00124 11 1472611 1477524 ECH
Cca11g00124 11 1472611 1477524 Cca11g00124 11 1472611 1477524 ECH