Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01600 ATGTTAAGTTACAGGCCACTGCATTTTTGTTTTCTGCTCACATTTTTCTTCTCCACTTCCTTTCTCTTGTCACTCCAAGCCTCAGGACAAGAAAATGAAGGAAAGGATGTGCGCTTTTCCCGGTTGATTGCATATGCCGCTGCTCCGTTCGAGAACTCAGCTCTTCCCTTAGCTGCAGAGAGAACACATAGAAAAGACCCTCTCAATGGCTTCAATAAGTACATTTATGGATGGAATATCAGTGACAGCCATTATTGGGCTTCTGTGGCATATACTGCAGTTCCAGTGTTTAGTATTGCAGCTGTCTGGTTCTTGGGCTTTGGCTTGTGCTTATTGATCATCACTGTTTGTTACTTCTGTCGTAAAAGAGAGCCTTATGGTTATTCGCCAACATGCTATGCCCTTTCCCTTATTCTCCTGATATTATTCACATTTACAGCAATGATTGGATGTGCAGTTCTCTACATTGGCCAAGGAAGTTTTCATCATAGCATGACGTCAACATTGCAGTATGTGGTAAATCAAGCTGATTCTACTGTGGATAagcttaggaatgtgtcagattatcttgctcaagctaagcaggttggaattgatcgagtttttctccccactaatgttcaaactgatattgatgaggcagaaacaaatatcaataactctgcgggcacacttgctgataagacaaaggagaattcagacaacatacgagatctcttagattctgcGAGGCTGGCACTAATCATAATAGCTGCCGTAATGCTAGTCTTGACATTTCTTGGATTTTTATTCTCAATTTTTGGCATACAGCTCCTTGTGTATATCTTGGTAATCGCAGGATGGGTTCTTGTTACTGGCACCCTTATATTATGTGGCTTGTTCCTTGTTCTCCATAATGCGacagcagacagttgtgtggctgtgaatgagtggatccagtatcccactgcacatacagctatggacgatattcttccctgtttggacaacgccacttctcaagaaacactgtcacggagcaaagaagtgACTTCTGAACTAGTCAATTTGGTCAACCAAGTTATCACCAATGTCTCCAACTTAAATTTCGCCCCCAATTTCACTCCACTCTACTATAACCAATCTGGTCCCTTGATGCCGCTCCTCTGCAATCCCTTCCATCCTGATATGACAGATAGGCAATGTGATGCTGGTGAAGTGACCCTAAGCAATGCAACACAGGTGTATGGGAATTTTGTGTGCCAGGTTTCACCATCTGAGATATGCATGACCCAGGGGCGTCTAACCCCTACCTTCTTTAACCAAATATCTGCTGGAATAAACGTGGGCAACGCATTGTATAATTACGCCCCGTCCCTGATTGAGCTTCAAGATTGCACGTTTGTTCGAGAAACTTTAAGCGATATATCCAGCGACCATTGTCCTGATTTACGGCGTTATAGTAGATGGATCTATATTGGATTGGTAATGGTCTCTTTTGCTGTCATGTTCTCCTTGATCTTCTGGATCGTGTATGGCAGAGAGCGAAGACATCGTCTTTATGCAAGGGAGTCAAAGGACTTTAATCCTTCGCATGCACCACCACCAGGACAAACATTAGCGTTAGCTCAGATCCCTGAAGGGGACAAGGATAATTAA 1638 0.3486 MLSYRPLHFCFLLTFFFSTSFLLSLQASGQENEGKDVRFSRLIAYAAAPFENSALPLAAERTHRKDPLNGFNKYIYGWNISDSHYWASVAYTAVPVFSIAAVWFLGFGLCLLIITVCYFCRKREPYGYSPTCYALSLILLILFTFTAMIGCAVLYIGQGSFHHSMTSTLQYVVNQADSTVDKLRNVSDYLAQAKQVGIDRVFLPTNVQTDIDEAETNINNSAGTLADKTKENSDNIRDLLDSARLALIIIAAVMLVLTFLGFLFSIFGIQLLVYILVIAGWVLVTGTLILCGLFLVLHNATADSCVAVNEWIQYPTAHTAMDDILPCLDNATSQETLSRSKEVTSELVNLVNQVITNVSNLNFAPNFTPLYYNQSGPLMPLLCNPFHPDMTDRQCDAGEVTLSNATQVYGNFVCQVSPSEICMTQGRLTPTFFNQISAGINVGNALYNYAPSLIELQDCTFVRETLSDISSDHCPDLRRYSRWIYIGLVMVSFAVMFSLIFWIVYGRERRHRLYARESKDFNPSHAPPPGQTLALAQIPEGDKDN 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01600 545 Coils Coil 211 231 - -
Cca03g01600 545 PANTHER TRANSMEMBRANE PROTEIN DDB_G0292058 36 518 IPR040283 -
Cca03g01600 545 PANTHER TRANSMEMBRANE PROTEIN 36 518 - -
Cca03g01600 545 MobiDBLite consensus disorder prediction 519 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01600 Cca-Chr3 34807104 34812685 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01600 - - gmx:100798323 969.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01600 03 34807104 34812685 Cca03g01600 03 34807104 34812685 ECH
Cca11g02243 11 48692038 48694599 Cca03g01600 03 34807104 34812685 ECH