Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g02175 ATGCACTTGTTGACTTTACATTGGCCTTTGTTTTGCTGTTATTTAACTTGTTCTATACAGAACAGTGGTTGTTTTGGATGCTGCATGAAACCCACACCAATTATTGCTGTGGATGAGCCGGCAAAGGGACTTAGAATTCAGGGGCAGACGGTGAGAAAACCAAACATATCAGATGGTTTCTGGAGTTCAAGCACTTGTGATCTGGATAACAGCAATGTTCAATCTCAGAGAAGTATCTCGTCTGCCAGTACATTAAATCAAATTCTCTATCACAGCGGAGGAACTTCTACTGCAGGCACCAATCCTGAGTTTGTAAACCCAGGTCTTCTTCTCTGGAATGAAAGCAGGCTTCAGTGGATTGGAAGTGGCAAATCTAGGAGGCATAGCCAACAAAAAAGAGAACACAGACTAAATAGATGGAATGCAACTTACGAAAGCTTGCTTGGGACTAGACAACCATTCCCCAAGCCCATCCCTTTATCTGAAATGGTCGAATTCCTGGTGGATGTTTGGGAGCGTGAAGGAATGTATGGTTGA 537 0.432 MHLLTLHWPLFCCYLTCSIQNSGCFGCCMKPTPIIAVDEPAKGLRIQGQTVRKPNISDGFWSSSTCDLDNSNVQSQRSISSASTLNQILYHSGGTSTAGTNPEFVNPGLLLWNESRLQWIGSGKSRRHSQQKREHRLNRWNATYESLLGTRQPFPKPIPLSEMVEFLVDVWEREGMYG 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g02175 178 Pfam Protein of unknown function (DUF4050) 139 177 IPR025124 -
Cca11g02175 178 Pfam Protein of unknown function (DUF4050) 64 135 IPR025124 -
Cca11g02175 178 PANTHER OS07G0479600 PROTEIN 21 177 - -
Cca11g02175 178 PANTHER DUF4050 FAMILY PROTEIN 21 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g02175 Cca-Chr11 47633310 47636621 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g02175 - - gmx:100813288 305.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g02175 11 47633310 47636621 Cca11g00159 11 1933415 1937752 ECH
Cca11g02175 11 47633310 47636621 Cca05g00525 05 11891181 11895234 ECH
Cca11g02175 11 47633310 47636621 Cca11g02175 11 47633310 47636621 ECH