Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00525 ATGGATGAAGCATCTAAAGGACTAAGAACTCAAGATCAAACAGTGACTAAAGTGGATGGATCAGAAGATTTTTGGAGCAGCAGCACCTTTGAATTAGACCATAGTGCTGCTCAGTCAGAGAGAAGCATTTCTGATCCTCAAAGCAGTGGAGGCAGTCAAAGTGGTCCTCCTGAATTTATCAACCATGGGCTTCTTCTCTGGAACCAGATAAGGCAACAATGGGTTGGAAATAAGAGGTCTGATAATGTCTCAGAAATTCAAGAACCAAGAATAAGTTCCAATGCCACCTACGACAACCTACTTGGGAACAACAAGCCCTTTCCCCAACCCATCCCTTTGAGAGAAATGATTGACTTTCTTGTTGATATTTGGGAGCAAGACGGTTTGTATGACTGA 396 0.4268 MDEASKGLRTQDQTVTKVDGSEDFWSSSTFELDHSAAQSERSISDPQSSGGSQSGPPEFINHGLLLWNQIRQQWVGNKRSDNVSEIQEPRISSNATYDNLLGNNKPFPQPIPLREMIDFLVDIWEQDGLYD 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00525 131 PANTHER OS07G0479600 PROTEIN 1 131 - -
Cca05g00525 131 MobiDBLite consensus disorder prediction 29 60 - -
Cca05g00525 131 Pfam Protein of unknown function (DUF4050) 31 87 IPR025124 -
Cca05g00525 131 Pfam Protein of unknown function (DUF4050) 91 131 IPR025124 -
Cca05g00525 131 MobiDBLite consensus disorder prediction 1 20 - -
Cca05g00525 131 MobiDBLite consensus disorder prediction 29 56 - -
Cca05g00525 131 PANTHER DUF4050 FAMILY PROTEIN 1 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00525 Cca-Chr5 11891181 11895234 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00525 - - gmx:100818696 226.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00525 05 11891181 11895234 Cca05g00525 05 11891181 11895234 ECH
Cca11g02175 11 47633310 47636621 Cca05g00525 05 11891181 11895234 ECH