Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01923 ATGAGCACCTGTCCAGGGTTATATTTTGATATTGGCAAGAAGGCCAAAGATGTTCTTCACAATGACTATGCACATCCATCACCAATTCATTTTCACTACCAATTCATGGACTATAATGTAGACCTCTCTTGTCAAGTAGACGAAATTGTACCTGGATTCAGAAGCCTTCTCAAATGCACCTTACCGGATTCTGGGAAGGTGGAATTACAACACGTGACTAACTACACTGGCATTACCGGATGCATTGGATTAGAAGGAAACATAGAAAAAGGATATGATCCTGTTGTAAACTTGTCGGGCCTTGTAGGAACTAACATTGTGTCCCTTGGAGCCAATGTTGCTTTTGACTTACCAACAAGAACAATCAACAAGCTGAATGCTGGCTTAGGCCTCAACACCGACTTCCTTGTTGCTTCCTTGACCATGCATGACAGGTTTGACATTGTTAAAGCCTCCTGCTATCATGAAGTGAACCCCCTGACCAAGACTGCCATTGCAGCAGAGCTTAAGCATAGCTTGTCAATGGGGGAAACAGGTGTCACCATTGGTGCTCAGCATGCATTTTTTCCGGAAACGTTGGTAAAGGCTCGATTTAACAACTATGGCAAGGCAGGTGCTCTTATTCAACAAGGGTTATGGGAGAGATGTTTCGTAACTTTAGCTGGAGAAGTGGATTTTAAGACCTCAGATAATAATTTGCATCCCAAGATTGGAGTCTCTGTGGCTTTAAGACCTTAG 738 0.4309 MSTCPGLYFDIGKKAKDVLHNDYAHPSPIHFHYQFMDYNVDLSCQVDEIVPGFRSLLKCTLPDSGKVELQHVTNYTGITGCIGLEGNIEKGYDPVVNLSGLVGTNIVSLGANVAFDLPTRTINKLNAGLGLNTDFLVASLTMHDRFDIVKASCYHEVNPLTKTAIAAELKHSLSMGETGVTIGAQHAFFPETLVKARFNNYGKAGALIQQGLWERCFVTLAGEVDFKTSDNNLHPKIGVSVALRP 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01923 245 Pfam Eukaryotic porin 36 229 IPR027246 GO:0005741|GO:0055085
Cca11g01923 245 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 245 IPR001925 GO:0005741|GO:0008308|GO:0098656
Cca11g01923 245 CDD Porin3_VDAC 5 244 IPR001925 GO:0005741|GO:0008308|GO:0098656
Cca11g01923 245 Gene3D Porin 2 244 IPR023614 -
Cca11g01923 245 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01923 Cca-Chr11 44571749 44574210 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01923 K15040 - gmx:100787061 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00544 03 9202996 9205194 Cca11g01923 11 44571749 44574210 ECH
Cca07g02118 07 49022077 49026651 Cca11g01923 11 44571749 44574210 ECH
Cca09g00196 09 4064616 4068791 Cca11g01923 11 44571749 44574210 ECH
Cca11g01923 11 44571749 44574210 Cca11g01923 11 44571749 44574210 ECH