Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00544 ATGAGCCAGAGTCCGGGCTTATATTTTGATATTGGAAAGAAGGCCAGAGATGTTCTTCACAAGGACTATGCTCAACAACCACCAATTCACTTTAACTACAGATCCTTGAATTGGAATTTAGATCTCTCCTGTCAAGTAGAAGAACTTGTGCCTGGACTAAGGGGACTTTTCAATTGTAACTTACCTGATTCTGGAAAGGTGGAACTTCAACACTTGAATAGATTCAGTGGGTTTTCTGGAAGCATTGGATTATTGGGAGACCCAGAAAAAGGATACAACCCTGTTGCAAACATCACTGGACTTATAGGAACCAGAATTCTCACCTTGGGAGCTAATCTTGACTATGACTTGTCAAGAAGGGAAACTAGCAATATGAATGCTGGGTTGAGCCTGAATAGTCCCTACCTTGTCGCTACCATGACCTTGCATGAGAATTTTCAAATTTTGAAAGGTTCGTGTTATTTTGAAGTGAATCCCTTGACGAAGACTGCACTTGCAGCAGAGGTGAAGTATGACCTTGCAGATGATGAGACTCGTGGTGTGACCGTTGGTGCTCAGCATGCATTGTTTCCTTGGACGTTGCTTAAGGCTCGACTTGACTCCTCTGGCAAGGTTGGTGCTCTTATTCGACAAAACTTTGGGAAGAAGTTTTCCATAACCGTGGCTGGTGAGATGAACTTGAACATCAAAGATAAAGAGAAGCTCCCTAAGGTTGGAATCTCCATGGCTCTAAAATAA 738 0.4268 MSQSPGLYFDIGKKARDVLHKDYAQQPPIHFNYRSLNWNLDLSCQVEELVPGLRGLFNCNLPDSGKVELQHLNRFSGFSGSIGLLGDPEKGYNPVANITGLIGTRILTLGANLDYDLSRRETSNMNAGLSLNSPYLVATMTLHENFQILKGSCYFEVNPLTKTALAAEVKYDLADDETRGVTVGAQHALFPWTLLKARLDSSGKVGALIRQNFGKKFSITVAGEMNLNIKDKEKLPKVGISMALK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00544 245 Gene3D Porin 2 245 IPR023614 -
Cca03g00544 245 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 245 - -
Cca03g00544 245 Pfam Eukaryotic porin 39 229 IPR027246 GO:0005741|GO:0055085
Cca03g00544 245 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 245 IPR001925 GO:0005741|GO:0008308|GO:0098656
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00544 Cca-Chr3 9202996 9205194 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00544 K15040 - gmx:100803984 398.667
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00544 03 9202996 9205194 Cca11g01923 11 44571749 44574210 ECH
Cca07g02118 07 49022077 49026651 Cca03g00544 03 9202996 9205194 ECH
Cca09g00196 09 4064616 4068791 Cca03g00544 03 9202996 9205194 ECH
Cca03g00544 03 9202996 9205194 Cca03g00544 03 9202996 9205194 ECH