Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02118 ATGGCTAAGGGTCCCGGTCTCTACTCTGACATCGGCAAGAGGGCCAGGGATCTGCTGTTCAAGGACTACCAAAGTGACCAGAAGTTCACCATCACCACTTTCTCACCCACTGGAGTTGCTATCACATCATCAGGAACCAGGAAAGGTGAACTGTTTGTGGCTGATGTCAACACCCAGTTGAAGAACAAAAACATCACTACTGATATCAAAGTTGATACAAATTCAAACCTTTTCACAACTATCACTGTCAATGAACCTGCTCCTGGTCTGAAGACTATCTTTAGCTTCAAGGTTCCTGACCAAAGGTCTGGAAAGGTGGAACTTCAGTACTTGCATGAGTATGCTGGAATTAGCACCAGTGTTGGGTTGACAGCAAACCCAATTGTCAACTTCTCTGGTGTTATAGGAACTAATGTTCTTGCTCTTGGTGCTGACCTTTCTTATGACTCCAAAAGTGGGGAGTTAACAAAATCCAATGCTGGACTGAGCTTCACCAAAGATGATTTGATTGCCTCATTGACTCTGAATGACAAAGGTGATGCTCTGAATGCTGCATACTACCATGTAGTTAACCCCGTGACCAACACTGCTGTTGGTGCTGAGGTGACTCACAGATTCTCAACTAATGAGAACACTCTCACCCTTGGAACCCAACATGCATTGGATCCATTGACCACATTGAAGGCACGTGTCAACAATTTTGGCAAGACGAGTGCTCTCATCCAGCACGAGTGGCGTCCCAAATCATTCTTTACCATTTCTGGTGAGGTAGACACCAAGGCCATTGAAAAGAGTGCCAAGGTTGGGTTGAGTTTGGTTCTCAAACCCTAA 831 0.4525 MAKGPGLYSDIGKRARDLLFKDYQSDQKFTITTFSPTGVAITSSGTRKGELFVADVNTQLKNKNITTDIKVDTNSNLFTTITVNEPAPGLKTIFSFKVPDQRSGKVELQYLHEYAGISTSVGLTANPIVNFSGVIGTNVLALGADLSYDSKSGELTKSNAGLSFTKDDLIASLTLNDKGDALNAAYYHVVNPVTNTAVGAEVTHRFSTNENTLTLGTQHALDPLTTLKARVNNFGKTSALIQHEWRPKSFFTISGEVDTKAIEKSAKVGLSLVLKP 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02118 276 PANTHER PORIN/VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL PROTEIN 1 276 - -
Cca07g02118 276 PANTHER VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL 1 276 IPR001925 GO:0005741|GO:0008308|GO:0098656
Cca07g02118 276 Pfam Eukaryotic porin 4 269 IPR027246 GO:0005741|GO:0055085
Cca07g02118 276 ProSitePatterns Eukaryotic mitochondrial porin signature. 219 241 IPR001925 GO:0005741|GO:0008308|GO:0098656
Cca07g02118 276 CDD Porin3_VDAC 5 275 IPR001925 GO:0005741|GO:0008308|GO:0098656
Cca07g02118 276 Gene3D Porin 1 275 IPR023614 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02118 Cca-Chr7 49022077 49026651 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02118 K15040 - gmx:100777928 519.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02118 07 49022077 49026651 Cca03g00544 03 9202996 9205194 ECH
Cca07g02118 07 49022077 49026651 Cca11g01923 11 44571749 44574210 ECH
Cca07g02118 07 49022077 49026651 Cca07g02118 07 49022077 49026651 ECH
Cca07g02118 07 49022077 49026651 Cca09g00196 09 4064616 4068791 ECH