Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01664 ATGGAGTGGCCACCATGTACGGACGAGTTCGAGAAGCTCTTAATTCGCATGAGCACACCCAGGGTTGTCATAGACAATACCGTGTGCTCCACTGCGACAATAGTCAAGGTTGATAGCGCCAGAAAACACGGGATTCTTTTGGATGCCGTACAAGTGCTCTCTGATCTGAACCTTTTAATTAAGAAGGCCTACATTTCCTCTGATGGCAGATGGTTCATGGATGTTTTCCACGTTACGGATCAAAACGGAAACAAGCTAACAGATGAGAGCGTCTTAAATTATATTGAACAGTCACTTGGCAGCATTCACAATGGTAAAACCAACCACTCAAACGGTCTCACTATCCTGGAATTAACTGGCACAGACCGTGTTGGTCTTCTTTCAGAGGTTTTTGCGGTACTGGCTGAGCAGAAATGTGATGTGGTTGATGCTAAGGTTTGGACCCATAATGGTCGTATTGCCTCCTTAATCTATGTAAAAGACCGCAATTCCGGGACCCTTATTGAGGACTCTCAGAAAATTAGTACGATTGAAGCACGGTTAAGAAATGTTTTAAAGGGTGACAATGACATTAGAAGTGCAAAAACTTCCATCACTCATGCCGTTGTGCACACGGAAAGAAGGCTACACCAAATGATGTACGCGGACCGTGATTACCAGAGGAATCCCATTTTCAAGTTTACTTCCGATTCCCCATTGGTCACTGTCCAAAATTGGGCAGAAAGGGGTTATTCTGTTGTCAATATTCAGTGCAAGGATCGAATCAAGCTTTTGTTTGATGTCGTGTGCAATTTGACTGACATGGAATATGTTGTGTTCCATGCAACTATTAAGACAACAATCGACCAAGCGTATCTGGAGTTTTATATAAGACACAGGGATGGAACCCCAATTAGTTCAGAACCAGAACGCCATCGCGTGATTCAATGCTTGCAAGCTGCTGTGGAGAGAAGGGCATATGAGGGTGTTAAGCTAGAGTTATGCATGGAAGACAGACAAGGACTTCTAGCAGATGTGATGAGAACGTTCCGGGAGAATGGATTGAATGTGACAAGGGCCGAGATATCAACCATTGGGGACATGGCATCGAATGTTTTCTATGTAACGGATGCGATAGGATACCCAGCTGATAAAAAAATCATCGAATCTGTAAGGCAGAAAGTTGGGTTAAGCAATTTAAAAGTGAAAGAGTTGGCATTTGTGTGCCATCAGAAGGCAGAAAGGGAAGATCAAGCAGTTGGGGTTGGTGGGGCAGTGTTGTTGTGTTTGGGTAGCCTCGTGAGAAAGAATCTTTACAATTTGGGTCTGATAAAATCTTGTTCTTAA 1326 0.4359 MEWPPCTDEFEKLLIRMSTPRVVIDNTVCSTATIVKVDSARKHGILLDAVQVLSDLNLLIKKAYISSDGRWFMDVFHVTDQNGNKLTDESVLNYIEQSLGSIHNGKTNHSNGLTILELTGTDRVGLLSEVFAVLAEQKCDVVDAKVWTHNGRIASLIYVKDRNSGTLIEDSQKISTIEARLRNVLKGDNDIRSAKTSITHAVVHTERRLHQMMYADRDYQRNPIFKFTSDSPLVTVQNWAERGYSVVNIQCKDRIKLLFDVVCNLTDMEYVVFHATIKTTIDQAYLEFYIRHRDGTPISSEPERHRVIQCLQAAVERRAYEGVKLELCMEDRQGLLADVMRTFRENGLNVTRAEISTIGDMASNVFYVTDAIGYPADKKIIESVRQKVGLSNLKVKELAFVCHQKAEREDQAVGVGGAVLLCLGSLVRKNLYNLGLIKSCS 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01664 441 ProSiteProfiles ACT domain profile. 115 196 IPR002912 -
Cca11g01664 441 CDD ACT_ACR_3 244 318 - -
Cca11g01664 441 SUPERFAMILY ACT-like 29 101 IPR045865 -
Cca11g01664 441 CDD ACT_ACR_4 322 393 - -
Cca11g01664 441 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 439 IPR040217 -
Cca11g01664 441 Pfam ACT domain 325 384 IPR002912 -
Cca11g01664 441 Pfam ACT domain 114 163 IPR002912 -
Cca11g01664 441 SUPERFAMILY ACT-like 111 185 IPR045865 -
Cca11g01664 441 PANTHER [PROTEIN-PII] URIDYLYLTRANSFERASE-RELATED 1 439 - -
Cca11g01664 441 CDD ACT_ACR_1 32 103 - -
Cca11g01664 441 ProSiteProfiles ACT domain profile. 324 411 IPR002912 -
Cca11g01664 441 SUPERFAMILY ACT-like 321 392 IPR045865 -
Cca11g01664 441 Gene3D - 113 195 - -
Cca11g01664 441 Gene3D - 322 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01664 Cca-Chr11 40697291 40699636 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01664 - - gmx:100794729 808.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00800 07 12968309 12972298 Cca11g01664 11 40697291 40699636 ECH
Cca07g02392 07 52619787 52622783 Cca11g01664 11 40697291 40699636 ECH
Cca11g01664 11 40697291 40699636 Cca11g01664 11 40697291 40699636 ECH