Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g02392 ATGAATCTCAGTGTTAGACGAGCTTACATTTCCTCTGATGGTGGGTGGTTCATGGATGTTTTTCATGTTACGGATCAAAATGGGAAAAAGTTTATGCAAGATGATGTAGCCGACCGCATTCAGCAGTCACTGGGTCCAAGAGCCTCTAGTTTCCGATCCTTGAGAAGGTCTGTTGGGGTCCAAGCTGAGGCAAAACATACAACCATTGAATTAACCGGAAGAGACAGGCCAGGATTGCTTTCAGAAGTGTTTGCCGTTCTTGCAGACCTCAAATGCAATGTGGTAGCAGCAGAAGTCTGGACCCACAATTCAAGAATGGCATCTGTTGTTTACATCACAGATGAGGGAACAGGATTGTCCATCGACAATCCGGATCGCCTTGCCAAGATCAAGCAGCTTCTGCTGTATGTGCTCGAAGGAGACATTGACAAGAAGAATGCCAACACTGCTGTTTCTGTTGGTTCTACTCACAAGGAAAGGAGGTTGCATCAGTTGATGTACGCCGACCGCGATTATGATGGGGATTCTGGATCAACAAGTGACAAGAACAAACTCCTTGTGACTGTTGATGATTGCACAGATAAGGGATACACTGTTGTGAACCTGAGGTGTCCAGACAGACCAAAGTTGCTGTTTGATACTGTGTGCACACTCACAGACATGCAGTATGTTGTGTACCATGGAACTGTCATTGCTGAAGGACCAGAGGCATATCAGGAATATTATATAAGGCATGTGGATGGAAGTCCTATCAGTTCTGAAGCAGAAAGGCAAAGGGTGATTCATTGTTTGGAGGCTGCTGTTAGGAGACGAACTTCTGAGGGCATAAAGCTAGAACTATGTGGTGAAGACAGGGTTGGCCTTTTGTCTGATGTAACTCGCATCTTTAGAGAAAATGGTCTCTCAGTCAACCGAGCTGAAGTTACAACCAGGGATACCCAAGCCATGAATGTTTTTTATGTGACTGATGTAACCGGAAATCCAGTTAAGAGTGAAACAATCGAAGCAGTTCGAAAAGAAATTGGTTTGACCATACTGCAAGTGAAAGATGATGTCTGCTCAAAACCTCCATCCCAAGAGAGTGGAAAATTCTCTTTGTCTAATCTTTTTCGATCAAGCTCTGAGAAATTTCTTTACAACTTGGGTCTAATGAAGTCTTATTCTTGA 1167 0.4387 MNLSVRRAYISSDGGWFMDVFHVTDQNGKKFMQDDVADRIQQSLGPRASSFRSLRRSVGVQAEAKHTTIELTGRDRPGLLSEVFAVLADLKCNVVAAEVWTHNSRMASVVYITDEGTGLSIDNPDRLAKIKQLLLYVLEGDIDKKNANTAVSVGSTHKERRLHQLMYADRDYDGDSGSTSDKNKLLVTVDDCTDKGYTVVNLRCPDRPKLLFDTVCTLTDMQYVVYHGTVIAEGPEAYQEYYIRHVDGSPISSEAERQRVIHCLEAAVRRRTSEGIKLELCGEDRVGLLSDVTRIFRENGLSVNRAEVTTRDTQAMNVFYVTDVTGNPVKSETIEAVRKEIGLTILQVKDDVCSKPPSQESGKFSLSNLFRSSSEKFLYNLGLMKSYS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g02392 388 Gene3D - 66 137 - -
Cca07g02392 388 Gene3D - 275 350 - -
Cca07g02392 388 SUPERFAMILY ACT-like 273 342 IPR045865 -
Cca07g02392 388 PANTHER OS08G0515400 PROTEIN 1 386 - -
Cca07g02392 388 Pfam ACT domain 279 340 IPR002912 -
Cca07g02392 388 Pfam ACT domain 67 115 IPR002912 -
Cca07g02392 388 ProSiteProfiles ACT domain profile. 68 145 IPR002912 -
Cca07g02392 388 ProSiteProfiles ACT domain profile. 277 351 IPR002912 -
Cca07g02392 388 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 386 IPR040217 -
Cca07g02392 388 CDD ACT_ACR_3 197 271 - -
Cca07g02392 388 CDD ACT_ACR_2 67 140 - -
Cca07g02392 388 CDD ACT_ACR_4 275 346 - -
Cca07g02392 388 SUPERFAMILY ACT-like 65 136 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g02392 Cca-Chr7 52619787 52622783 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g02392 - - gmx:100816426 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g02392 07 52619787 52622783 Cca07g02392 07 52619787 52622783 ECH
Cca07g02392 07 52619787 52622783 Cca11g01664 11 40697291 40699636 ECH
Cca07g02392 07 52619787 52622783 Cca07g00800 07 12968309 12972298 ECH