Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00800 ATGGATGATGAATATGCTAAGCTCATAAGAAGGATGAACCCACCAAGGGTTGTGATTGACAACAATGCCTGTGAAAACGCCACTGTTATTCAGGTTGATAGTGTCAACAAACATGGGATTCTCTTGGATGTTGTCCAAGTTATTTCAGATATGAACCTTGTAATAACAAAGGCATACATCTCCTCTGATGGAGTATGGTTCATGGATGTGTTCAATGTGATTGATCATAATGGAAACAAGATCAGAGATAAGGAAGTCATTGATTATATTCAGAGGAGACTTGAAAACAATCCCAGTTTTGCACCCTCAATGAGAGAATCTGTTGGGGTTGTACCTACTGAAGAACACACAGTAATTGAACTTACTGGCACAGACAGGCCAGGATTACTATCCGAAATCTGTGCAGTTCTGACGGACCTTCGCTGCAGTGTGGTGACTGCTGAGATATGGACACACAACACAAGAGCAGCAGCTGTAGTTCATGTGACGGATGAATCCAGCGGCAGCGCCATCAAGGATCCGTCTCGCCTCTCTACAATAAGGGATTTGCTTTCTAATGTTCTTAGGGGGAGTAATGATCCAAAGACTGCAAGGACAACACTTTCACCCCCTGGAGTTACAAATAGGGACAGAAGATTACATCAGATTATGTTTGCTGATAGGGACTATGAAAGGATTGAAAGAGCAGGAAGAGGGGGACTCAGAGATAGAGATAGAGATAAACGCCCTCTACCTCATGTAACTGTTGTAGATTGTGTTGAGAAAGATTACACTGTGGTTACCATGAGAGCAAAAGATCGACCGAAGTTGTTGTTCGATATTGTTTGCACTTTAACAGACATGCAGTATGTAGTTTTTCATGGAGTTGTTCAGACATTAAGGACAGAAGCTTTTCAGGAGTTTTATATTAGGCATGTCGATGGCTTTCCCATAAGTTCGGAGGCCGAGCGTGAACGACTCGTGCAGTGTCTTGAAGCAGCAATTGAAAGGAGGGCATCTGAGGGGATGGAGCTGGAGTTGTGCACGGAGGATCGTGTTGGACTTCTCTCTGATATCACAAGAATATTTCGCGAAAACAGTTTATGTATCAAAAGAGCAGAAATATCAACAGAAGATGGAAAGGCAAGAGATACTTTTTATGTCACAGATGTTACTGGTAACCCAGTTGACCCCAAGATTATCGATTCAATTCGCAGACAGATTGGTGACAAAGTACTGAAAGTAAAACAAAACTCTAGTCTTTCACCAAAGGCCCCTCAACCAACAACAATTGGATTTCTCTTTGGAAATTTTTTCAAAGCTCGATCTTTTCAGAATTTTAAGTTGATCAGATCTTATTCTTAA 1344 0.4159 MDDEYAKLIRRMNPPRVVIDNNACENATVIQVDSVNKHGILLDVVQVISDMNLVITKAYISSDGVWFMDVFNVIDHNGNKIRDKEVIDYIQRRLENNPSFAPSMRESVGVVPTEEHTVIELTGTDRPGLLSEICAVLTDLRCSVVTAEIWTHNTRAAAVVHVTDESSGSAIKDPSRLSTIRDLLSNVLRGSNDPKTARTTLSPPGVTNRDRRLHQIMFADRDYERIERAGRGGLRDRDRDKRPLPHVTVVDCVEKDYTVVTMRAKDRPKLLFDIVCTLTDMQYVVFHGVVQTLRTEAFQEFYIRHVDGFPISSEAERERLVQCLEAAIERRASEGMELELCTEDRVGLLSDITRIFRENSLCIKRAEISTEDGKARDTFYVTDVTGNPVDPKIIDSIRRQIGDKVLKVKQNSSLSPKAPQPTTIGFLFGNFFKARSFQNFKLIRSYS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00800 447 Pfam ACT domain 28 79 IPR002912 -
Cca07g00800 447 Pfam ACT domain 341 399 IPR002912 -
Cca07g00800 447 Pfam ACT domain 117 171 IPR002912 -
Cca07g00800 447 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 1 439 IPR040217 -
Cca07g00800 447 CDD ACT_ACR_3 257 331 - -
Cca07g00800 447 ProSiteProfiles ACT domain profile. 29 108 IPR002912 -
Cca07g00800 447 ProSiteProfiles ACT domain profile. 118 204 IPR002912 -
Cca07g00800 447 SUPERFAMILY ACT-like 333 403 IPR045865 -
Cca07g00800 447 CDD ACT_ACR_2 117 190 - -
Cca07g00800 447 ProSiteProfiles ACT domain profile. 337 413 IPR002912 -
Cca07g00800 447 SUPERFAMILY ACT-like 112 188 IPR045865 -
Cca07g00800 447 CDD ACT_ACR_4 335 406 - -
Cca07g00800 447 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR6 1 439 - -
Cca07g00800 447 SUPERFAMILY ACT-like 24 95 IPR045865 -
Cca07g00800 447 Gene3D - 336 412 - -
Cca07g00800 447 Gene3D - 112 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00800 Cca-Chr7 12968309 12972298 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00800 - - gmx:100818506 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00800 07 12968309 12972298 Cca11g01664 11 40697291 40699636 ECH
Cca07g00800 07 12968309 12972298 Cca07g00800 07 12968309 12972298 ECH
Cca07g02392 07 52619787 52622783 Cca07g00800 07 12968309 12972298 ECH