Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01201 atgataatGGAGCAGGGTGGTGGTAAAGAAGACCAGAAGAGGATGCTCAACAAGTATGCCCTTGCTTGTGCTGTAGTTGCTTCGATGGTATCCATCATATCCGGTTACGACACTGGTGTGATGAGTGGAGCATTGATATTCATCAAGGAGGATATTGGAATCAACGACACCCAACAAGAAATTCTAGCAGGAATCTTGAACCTATGCGCATTGGTGGGATCCTTAGCCGCTGGAAGAACCTCGGATTACATTGGTCGACGCTACACAATTTTGTTGGCCTCAATTCTCTTCATGGTTGGTTCAATTCTCATGGGGTACGGTCCAAACTACGCAATCTTAATGCTGGGAAGGTGCGTGGGTGGTGTCGGTGTGGGCTTTGCACTGATGATAGCACCAGTTTACACAGCAGAGATTTCCTCTGCATCATCGAGGGGTTTTATAACCTCTTTACCAGAGCTTTGTATTGGCATTGGGATCTTACTTGGTTACATATCAAACTACTTGTTGGGGAAAATGAGTTTGAAGCTTGGATGGAGATTGATGCTGGGTGTTGCTGCACTTCCTTCACTTGCTTTAGCTTTGGGCATTCTGGCCATGCCAGAGTCTCCAAGGTGGTTGGCGATGCAAGGTCGTTTGGAAGATGCCAAGAAGGTGCTACTGCGAGTTTCCAACACAGCACAAGAGGGTGAACTTCGTTTCGCGGAAATCAAAGGTGTTGTTGGCGTTGGGCTTGATGAGAAGACGAAGCTCTCACAGCGTGGTGAAGGGGTTTGGAAAGAGTTGCTGGTGAGTCCCACACCGGAGGTTCGTTGGGCGCTGATTGCAGCCGTTGGGATTCACTTCTTCGAGCACGCAACTGGCATTGAGGCTGTGATGTTGTATAGCCCCAGAATCTTCAAGAAAGCTGGTGTGACAAGTAAGGACAAGCTTTTGCTTGCTACAGTTGGCATTGGCCTCACCAAGATCGTTTTCTTGGTCATAGCATTGTTTTTGCTGGACAAAGTTGGTAGGAGGCGTCTCTTGCAAGTAAGCACTGGGGGAATGATTTGTGGCCTCGCGCTATTGGCCTTTAGTTTGACCATGGTGGATCATTCCACTGAAAACCTCTTGTGGGCCTTGAGCCTTAGCATTGCCGCCACCTACGCTTATGTTGCTTTCTTTAACATTGGGCTTGGGCCTGTCACTTGGGTCTACGCGTCGGAGATTTTCCCTTTGAAGCTGAGAGCCCAAGGGGTGAGTATAGGAGTTGCGGTGAATAGAACCATGAACGCTGCGGTTTCCATGAGTTTTATCTCAATCTACAAAGCGATCACCATAGGTGGAAGCTTTTTCATGTTTGCTGCTATATCTATATTGGCTTGGGTCTTCTTCTATCTTTTCCTTCCGGAAACCAAAGGCGTGCCCTTAGAAGAAATGGAGATGATTTTCCGCAAAAAAGCTACCGGTAAAAATGTAGCTATGGAAACTTATCCAAGACAGCAAGCATAG 1488 0.4724 MIMEQGGGKEDQKRMLNKYALACAVVASMVSIISGYDTGVMSGALIFIKEDIGINDTQQEILAGILNLCALVGSLAAGRTSDYIGRRYTILLASILFMVGSILMGYGPNYAILMLGRCVGGVGVGFALMIAPVYTAEISSASSRGFITSLPELCIGIGILLGYISNYLLGKMSLKLGWRLMLGVAALPSLALALGILAMPESPRWLAMQGRLEDAKKVLLRVSNTAQEGELRFAEIKGVVGVGLDEKTKLSQRGEGVWKELLVSPTPEVRWALIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVTSKDKLLLATVGIGLTKIVFLVIALFLLDKVGRRRLLQVSTGGMICGLALLAFSLTMVDHSTENLLWALSLSIAATYAYVAFFNIGLGPVTWVYASEIFPLKLRAQGVSIGVAVNRTMNAAVSMSFISIYKAITIGGSFFMFAAISILAWVFFYLFLPETKGVPLEEMEMIFRKKATGKNVAMETYPRQQA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01201 495 ProSitePatterns Sugar transport proteins signature 1. 328 345 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca11g01201 495 PANTHER POLYOL TRANSPORTER 3-RELATED 10 485 - -
Cca11g01201 495 Pfam Sugar (and other) transporter 23 476 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca11g01201 495 Gene3D MFS general substrate transporter like domains 12 481 IPR036259 -
Cca11g01201 495 TIGRFAM SP: MFS transporter, sugar porter (SP) family 14 472 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g01201 495 ProSiteProfiles Major facilitator superfamily (MFS) profile. 23 465 IPR020846 GO:0022857
Cca11g01201 495 ProSitePatterns Sugar transport proteins signature 2. 119 144 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca11g01201 495 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 10 485 IPR045262 GO:0015144
Cca11g01201 495 ProSitePatterns Sugar transport proteins signature 1. 77 94 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca11g01201 495 SUPERFAMILY MFS general substrate transporter 10 473 IPR036259 -
Cca11g01201 495 PRINTS Sugar transporter signature 31 41 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g01201 495 PRINTS Sugar transporter signature 114 133 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g01201 495 PRINTS Sugar transporter signature 283 293 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g01201 495 PRINTS Sugar transporter signature 377 398 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca11g01201 495 PRINTS Sugar transporter signature 400 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01201 Cca-Chr11 30228986 30231848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g01201 10 476 Organic Solute Cotransporters AT2G18480 69.556 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01201 - - gmx:100806930 817.764
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01364 06 28483428 28487524 Cca11g01201 11 30228986 30231848 PCT
Cca11g01201 11 30228986 30231848 Cca06g01362 06 28471638 28474394 PCT