Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01362 ATGGAAAACGGCGACAACCCTAGAGGGTTCAATAAGTATGTCTGTTCCTCTGTATTAGCTGCCACTACTGTCTCAGCTATATTTGGTTATGTTGTGGGAGTGATGACCGGAGCAGTCATATTCATAAAGGAAGATCTTCAAATCAATGACCTACAAATACAATTCCTCGTAGGCATGTTACATTTGTGCATGCTACCAGGATGCATGGTTGCAGGAAGAACATCTGATTATATAGGTCGCCGCTACACCATCATTCTAGCGTTCATCACCTTCTTATTGGGCTCCATTTTAATGGGCTATGGCCCATCCTATTCAATCTTAATGATTGGAAACTGCATTGTTGGAATTGGTGCGGGTTTTGCACTGGTAGTAGCACCGGTTTACAGCACAGAGATTTCACCTCTTTCTTCAAGAGGCTTTTTTACTTCTCTCccagaactttccatgaacataggagtcttgcttgcctttgtgtcaaactacttctttgaaaaaatgacactgagacttggatggaggatgatggtggttattcccgcagttccttcactTTGCTTAATCATTCTCATGTTAAAATTGGTGGAGTCTCCAAGGTGGTTGATCATGCAAGGACGTGTAGGTGAGGCAAGGAAAGTGCTTTTACTAGTGTCTAACACAAAGGAAGAGGCTGAACAACGGTTGAGGGAAATAAAAGCTGTTGTTGGAATTGATGAAGATTGCACCAAAGACATTGTCCAGGTTGCAATGAAAACCCGTAGTGGTAAAGGAGCACTGATAGAGTTATTTTGTGAACCTTCACCTTCAGTGCGTAGGATTCTAATTGCAGCCATTGGGGTTCATTTGTTCTCGAGGATTGGCGGAAGTGGGGGTATTTTGTTGTATAGCCCAAGGGTTTTTGAGAGAACAGGAATCGCTGAGAAAAGCAAGCTCATGCTAGCAACTGTTGGCATGGGAATCAGCAACGTTGTGTTTGCATTCATATCAATATTCTTGTCTGATAGATTTGGGAGGAGGATTCTCTTGTTGATTAGTGCTTGTGGTGTGGTTGTGAGCCTATTAGGGTTAGGCTTTTGCTTGACTATAGTGGAGCATTCTAAAGAAAAACTACTTTGGGTAACAAGCTTAACCGTTTTCTTTACCTACATATTTTTGGGTTTTGTGTGTATTGGAATAGGGCCTGTGACGTGGGTTTATAGCTCCGAGATACTTCCCCTCAGGTTCAGAGCACAGGGCCTTGGTGTATGTGTGGTTGTGAACAGAATCACAAATGTGGCAGTAGTTACAAGTTTCATTTCGATTTACAAAATGATAACAATGGGTGGGATTTTCTTTATGTTAACCGGCATCAATGTTTCGGCTTTATGGTTCTACTATTCATTTTTGCCTGAAACTAAAGGAAGATCGTTAGAAGATATGGAGACTATCTTTGGAAGAAATTCTAAGTAA 1446 0.3804 MENGDNPRGFNKYVCSSVLAATTVSAIFGYVVGVMTGAVIFIKEDLQINDLQIQFLVGMLHLCMLPGCMVAGRTSDYIGRRYTIILAFITFLLGSILMGYGPSYSILMIGNCIVGIGAGFALVVAPVYSTEISPLSSRGFFTSLPELSMNIGVLLAFVSNYFFEKMTLRLGWRMMVVIPAVPSLCLIILMLKLVESPRWLIMQGRVGEARKVLLLVSNTKEEAEQRLREIKAVVGIDEDCTKDIVQVAMKTRSGKGALIELFCEPSPSVRRILIAAIGVHLFSRIGGSGGILLYSPRVFERTGIAEKSKLMLATVGMGISNVVFAFISIFLSDRFGRRILLLISACGVVVSLLGLGFCLTIVEHSKEKLLWVTSLTVFFTYIFLGFVCIGIGPVTWVYSSEILPLRFRAQGLGVCVVVNRITNVAVVTSFISIYKMITMGGIFFMLTGINVSALWFYYSFLPETKGRSLEDMETIFGRNSK 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01362 481 ProSitePatterns Sugar transport proteins signature 1. 328 345 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca06g01362 481 ProSitePatterns Sugar transport proteins signature 2. 113 138 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca06g01362 481 ProSitePatterns Sugar transport proteins signature 1. 71 87 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cca06g01362 481 SUPERFAMILY MFS general substrate transporter 9 473 IPR036259 -
Cca06g01362 481 TIGRFAM SP: MFS transporter, sugar porter (SP) family 10 471 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca06g01362 481 PANTHER POLYOL/MONOSACCHARIDE TRANSPORTER 1 8 481 - -
Cca06g01362 481 Pfam Sugar (and other) transporter 20 476 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca06g01362 481 PRINTS Sugar transporter signature 25 35 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca06g01362 481 PRINTS Sugar transporter signature 108 127 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca06g01362 481 PRINTS Sugar transporter signature 377 398 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca06g01362 481 PRINTS Sugar transporter signature 400 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cca06g01362 481 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 8 481 IPR045262 GO:0015144
Cca06g01362 481 Gene3D MFS general substrate transporter like domains 8 480 IPR036259 -
Cca06g01362 481 ProSiteProfiles Major facilitator superfamily (MFS) profile. 17 465 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01362 Cca-Chr6 28471638 28474394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01362 3 479 Organic Solute Cotransporters AT4G36670 50.734 2.49e-179 510
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01362 - - gmx:102662503 755.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01362 06 28471638 28474394 Cca06g01362 06 28471638 28474394 ECH
Cca11g01201 11 30228986 30231848 Cca06g01362 06 28471638 28474394 PCT