LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca11g00678	ATGACCTTTTGTTTTTGCTTTTGTTTTGGCAGCGAGAAAGCGGACCTCGGTGGCGTCGCCGCCGCCAAGATCAAGCAGTTGACGGCGGAGCTGGAGGCCGACCGGTCGAAGGCGTTTAACCCGGACGAGAGGATCCGAACCGGGTTCGCCAACTTCAAGAGTGAGAAATTTCAGAAGAATCCAGAATTATATGGTGAACTTGCCAAAGGCCAGAGTCCAAAGTTTATGGTGTTTGCTTGCTCAGACTCGAGAGTTTGCCCATCCCATATTCTGGATTTCCAACCGGGTGAAGCCTTTGTGGTCCGAAATATCGCCAACATGGTTCCACCATATGACAAGACGATGTATTCAGGAACAGGGGCGGCCATTGAATATGCAGTCTTACATTTAAAGGTGGAGAATATTGTGGTCATTGGACACAGCTGCTGTGGAGGTATAAAGGGCCTCATGTCTATCCCAGATGACGGGACCACTGCAAGTGAATTCATAGAGAATTGGGTCCAAATTTGTACTCCAGCAAAGTCCAAGGTTAAAACAGAAGCAAGTGCATTAGAATTCTCGGAGCAGTGTACGAACTGCGAGAAGGTAAGTAACTTTTACTTGAGGAGCTCTACGTCCCACACCACTTTGTTATATGGTGTCATAACTTGTTTCTAA	657	0.4734	MTFCFCFCFGSEKADLGGVAAAKIKQLTAELEADRSKAFNPDERIRTGFANFKSEKFQKNPELYGELAKGQSPKFMVFACSDSRVCPSHILDFQPGEAFVVRNIANMVPPYDKTMYSGTGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASEFIENWVQICTPAKSKVKTEASALEFSEQCTNCEKVSNFYLRSSTSHTTLLYGVITCF	218

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca11g00678	218	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 2.	124	144	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Cca11g00678	218	PANTHER	CARBONIC ANHYDRASE	11	196	-	-
	Cca11g00678	218	SMART	Pro_CA_2	68	212	IPR001765	GO:0004089\|GO:0008270
	Cca11g00678	218	Gene3D	Carbonic anhydrase	32	204	IPR036874	GO:0004089\|GO:0008270
	Cca11g00678	218	Pfam	Carbonic anhydrase	76	188	IPR001765	GO:0004089\|GO:0008270
	Cca11g00678	218	ProSitePatterns	Prokaryotic-type carbonic anhydrases signature 1.	80	87	IPR015892	GO:0004089\|GO:0008270\|GO:0015976
	Cca11g00678	218	PANTHER	CARBONIC ANHYDRASE	11	196	IPR001765	GO:0004089\|GO:0008270
	Cca11g00678	218	SUPERFAMILY	beta-carbonic anhydrase, cab	35	196	IPR036874	GO:0004089\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca11g00678	Cca-Chr11	11324599	11329981	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca11g00678	K01673		-	gmx:100808326	346.665

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca11g00678	11	11324599	11329981	Cca11g00678	11	11324599	11329981	ECH
	Cca11g00678	11	11324599	11329981	Cca09g00091	09	1576271	1584245	ECH
	Cca06g00819	06	21204178	21213754	Cca11g00678	11	11324599	11329981	PCT