Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g00091 ATGGGAAAGGACTATGAGCAAGCTATTGAAGAGCTCCAGAAATTGTTGAGGGAGAAGGGTGAACTGAGAGCATCAGCAGCTGAGAGAGTGGAGCAGATAACAGCTTCACTGGGGACATCATCATCTGATGGCATCCCATCATCTGAAGCCTCAGACAGGATCAAATCTGGTTTCCTTTACTTCAAGAAGGAGAAATATGACAAGAGCCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAGAGCCCCAAGTTTATGGTGTTTGCTTGCTCAGACTCAAGGGTGTGCCCATCTCATGTGCTAGATTTCCAACCTGGAGAGGCCTTTGTGGTCAGAAATGTTGCTAACATTGTCCCACCATATGACCAGTCAAAATACTCTGGAGCTGGGGCAGCCATTGAGTATGCTGTTTTGCATCTCAAGGTGTCCAACATTGTGGTCATTGGACACAGTGCTTGTGGTGGTATTAAGGGGCTTTTGTCTTTCCCATATGATGGAACCTACTCCACTGATTTTATTGAGGAGTGGGTCAAAATTGGCTTACCTGCAAAGGCAAAGGTGAAGGCACAGCATGCGAATGCACCTTTTGCAGAGCTATGCACACACTGTGAGAAGGAAGCTGTGAATGTTTCCCTTGGAAACTTGCTAACATACCCATTTGTTAGAGATGGGTTGGTGAACAACACATTGGCACTGAAAGGAGGATACTATGACTTTGTTAAGGGATCTTTTGAGCTCTGGGGCCTTCACTTTGGCCTTGCATCCTCTTTCTCCGTTAAAGATGTGGCCACCATTCTGCATTGGAAGCTATAG 810 0.463 MGKDYEQAIEELQKLLREKGELRASAAERVEQITASLGTSSSDGIPSSEASDRIKSGFLYFKKEKYDKSPALYGELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQSKYSGAGAAIEYAVLHLKVSNIVVIGHSACGGIKGLLSFPYDGTYSTDFIEEWVKIGLPAKAKVKAQHANAPFAELCTHCEKEAVNVSLGNLLTYPFVRDGLVNNTLALKGGYYDFVKGSFELWGLHFGLASSFSVKDVATILHWKL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g00091 269 Coils Coil 5 29 - -
Cca09g00091 269 SMART Pro_CA_2 77 247 IPR001765 GO:0004089|GO:0008270
Cca09g00091 269 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 133 153 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cca09g00091 269 SUPERFAMILY beta-carbonic anhydrase, cab 51 252 IPR036874 GO:0004089|GO:0008270
Cca09g00091 269 CDD beta_CA_cladeB 57 246 IPR045066 GO:0004089|GO:0008270
Cca09g00091 269 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 89 96 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cca09g00091 269 PANTHER BETA CARBONIC ANHYDRASE 2, CHLOROPLASTIC 1 258 - -
Cca09g00091 269 Gene3D Carbonic anhydrase 38 258 IPR036874 GO:0004089|GO:0008270
Cca09g00091 269 Pfam Carbonic anhydrase 85 242 IPR001765 GO:0004089|GO:0008270
Cca09g00091 269 PANTHER CARBONIC ANHYDRASE 1 258 IPR001765 GO:0004089|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g00091 Cca-Chr9 1576271 1584245 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g00091 K01673 - gmx:100781868 486.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g00091 09 1576271 1584245 Cca09g00091 09 1576271 1584245 ECH
Cca06g00819 06 21204178 21213754 Cca09g00091 09 1576271 1584245 ECH
Cca11g00678 11 11324599 11329981 Cca09g00091 09 1576271 1584245 ECH