Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g00819 ATGGCAGGAGAATCGTACGAGGAAGCCATAGCAAGTCTGAGCAAGCTTCTCAGTGAGAAAGCTGACCTCGGTGGCGTCGCCGCCGCGAAGATCAAGGAGCTGACGGCGGAGCTTGATGCCGCCAGTTCGAAGCCGGTTAACCCGGAGGAGAGGATCAAAACCGGGTTCATCCACTTCAAGACTGAGAAATTTGAGAAAAATCCTGATCTATATGGCGAACTTGCCAAAGGCCAGAGCCCAAAGTTTATGGTATTTGCATGCTCAGACTCGAGAGTTTGCCCATCCCATGTTCTGGATTTCCAACCGGGTGAAGCCTTCATGGTCCGAAACATCGCCAACATGGTTCCACCATATGAAAAGACGAAGTATTCAGGAACAGGGGCAGCCATTGAATATGCAGTGTTGCATTTAAAGGTGGAGAATATTGTAGTCATTGGCCACAGTTGCTGTGGAGGTATAAAGGGACTCATGTCTATCCCAGATGATGGGACAACTGCAAGTGAATTCATAGAGCAATGGGTCCAAATATGTACCCCAGCAAAGTCCAAGGTTAAAGCAGAAACAGGTGACTTAAGTTTCACAGAGCAGTGTACTAACTGTGAGAAGGAAGCTGTGAATGTATCACTTGGAAACCTATTAACATATCCATTTGTTAGAGAGGGGGTTGTGAAGAAAACTCTCGCTCTCAAAGGAGCACATTACGATTTCGTTAAAGGCACTTTTGAGCTGTGGGATTTGAACTTCAAGCTTTTCCCCACTTTATCCGTTTAA 771 0.4643 MAGESYEEAIASLSKLLSEKADLGGVAAAKIKELTAELDAASSKPVNPEERIKTGFIHFKTEKFEKNPDLYGELAKGQSPKFMVFACSDSRVCPSHVLDFQPGEAFMVRNIANMVPPYEKTKYSGTGAAIEYAVLHLKVENIVVIGHSCCGGIKGLMSIPDDGTTASEFIEQWVQICTPAKSKVKAETGDLSFTEQCTNCEKEAVNVSLGNLLTYPFVREGVVKKTLALKGAHYDFVKGTFELWDLNFKLFPTLSV 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g00819 256 Gene3D Carbonic anhydrase 39 256 IPR036874 GO:0004089|GO:0008270
Cca06g00819 256 CDD beta_CA_cladeB 55 244 IPR045066 GO:0004089|GO:0008270
Cca06g00819 256 SMART Pro_CA_2 75 245 IPR001765 GO:0004089|GO:0008270
Cca06g00819 256 PANTHER CARBONIC ANHYDRASE 1 256 IPR001765 GO:0004089|GO:0008270
Cca06g00819 256 SUPERFAMILY beta-carbonic anhydrase, cab 50 254 IPR036874 GO:0004089|GO:0008270
Cca06g00819 256 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 2. 131 151 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cca06g00819 256 ProSitePatterns Prokaryotic-type carbonic anhydrases signature 1. 87 94 IPR015892 GO:0004089|GO:0008270|GO:0015976
Cca06g00819 256 Pfam Carbonic anhydrase 83 240 IPR001765 GO:0004089|GO:0008270
Cca06g00819 256 PANTHER CARBONIC ANHYDRASE 1 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g00819 Cca-Chr6 21204178 21213754 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g00819 K01673 - gmx:100810496 484.182
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g00819 06 21204178 21213754 Cca06g00819 06 21204178 21213754 ECH
Cca06g00819 06 21204178 21213754 Cca09g00091 09 1576271 1584245 ECH
Cca06g00819 06 21204178 21213754 Cca11g00678 11 11324599 11329981 PCT