Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00575 ATGTCATCTGCTGGTGTAATCACTCTTAGCCCTGTCCCAAGGGAGCTATTGTTGTCTCCAAATGGATACTATACCCCACTGCACTTGTCCATGGATCATGAGTTCATTTTCATATATCTCTCCTATTCCGGATCCTTGACCCCAATGCGAGTTCTTCCCTGCGATACCATCGAGTCGGTAAAGCTCAAAATCCTAAAGGCTGAGGGGCTTCCTTCATTGACAAACAAGCAAAAGTTGGTTTGTGATGGCCGGGAGCTGGCACGGAGCAATTCTCTGCTGAAGGATTATGGGGTTACAGAAGGGAATATTCTGCATTTGGTGATTAGGCTTTCAGATCTCCAGACCATCAGTGTGAGAACTTCTTCTGGCAAGGAGTTTACTTTTCAGGTGGAGAGATGCAGAGATGTTGGGTATGTTAAGCAACAGATTGCGAAAAAGGAGAAGCGCTTTGCTGATCCTGAAAAGCAGGAAGTTGTGTGTAATGGGGAGCTGCTTGAGGATCAGAGGCTTATTGATGATATCTGCAGTAAATATAATGATGCAGTGATTCATCTTTTCGTTAGAGTGAAATATGCTGAAGTTAGGACAGGACAAGATGAGTTGTCCATTGTGGCAAAGGAGTTGAATGATACAAAAGATTGTGATGTTAGTGAAAACAATATTAGGAGAAAATATGATGTTAGTAAAGAAGATATAGGAAGGGATTATGGAGCCGAGCCAATTGTGTCGAGGAAGGCTCTTGAGAGAGATCTTCTTTTGGAGCCAGTTATTGTTAACAAGAAAATTGAATTAGCTTCTGATATTTGGAATATGATTAACTCTACATATGAAGGGTTAGACAGTGGACATTATCCAATCAGATCTGCTGAGGGTACAGGGGGAGCTTACTTTATGGTTGATTCAACAGGGCAAAGGTATGTATCTGTTTTTAAGCCCATTGATGAAGAGCCAATGGCTGTGAATAACCCTAGAGGTTTGCCTTTCTCAGAAGATGGTGAAGGTTTAAAGAAGGGTACTAGAGTTGGTCAGGGAGCATTTAGGGAAGTTGCAGCTTATATTTTGGACCATCCAATGAGTGGCCGCCGATCATTATTTGGTGATGAGAAGGGCTTTGCTGGGGTTCCACCGACTGTTCTGGTTCAGTGCTTGCATAAAGGATTTAACCATCCTGGGGACTTGACCACCAAGATTGGCTCCTTGCAAATGTTCATGGAGAATAATGGAAGTTGTGAGGATATGGGCCCTGGGGCTTTCCCAGTGAAGGAAGTGCATAAAATTACTGTGCTGGACATGAGACTTGCAAATGCTGATCGACATGCTGGGAATATTTTAATCGGAAAAGAGGAGAAAAATGACCAGGCTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCCACAAGTTTTGAAGATTGTACCTTTGAATGGCTTTATTGGCCCCAAGCTCGCCAGCCGTACTCCCCAGAGATCATTGACTATATAAAATCACTGAATGCTGATGAAGATATTGCTCTTCTGAAGTTTCATGGATGGGATCTGCGACTTGAATGTGCTCGTACTCTTCAAATCTCAACCATGCTTTTGAAGAAAGGAGTGGAGAGGGGCATGACCCCCTTTGCCATAGGAAGCCTTATGTGCAGAGAATCCTTGAACAAGGAGTCTGTGATCGAGGGAATTGTAAAAGCAGCTCTGGATTCTGTTCTTCCTGGCACTAGTGAAGCCACATTTCTGGATGCTGTTTCTGAAATCATGGACCAGCACCTTGATGAAATCACAAGTTCCATCTCTTAA 1791 0.4322 MSSAGVITLSPVPRELLLSPNGYYTPLHLSMDHEFIFIYLSYSGSLTPMRVLPCDTIESVKLKILKAEGLPSLTNKQKLVCDGRELARSNSLLKDYGVTEGNILHLVIRLSDLQTISVRTSSGKEFTFQVERCRDVGYVKQQIAKKEKRFADPEKQEVVCNGELLEDQRLIDDICSKYNDAVIHLFVRVKYAEVRTGQDELSIVAKELNDTKDCDVSENNIRRKYDVSKEDIGRDYGAEPIVSRKALERDLLLEPVIVNKKIELASDIWNMINSTYEGLDSGHYPIRSAEGTGGAYFMVDSTGQRYVSVFKPIDEEPMAVNNPRGLPFSEDGEGLKKGTRVGQGAFREVAAYILDHPMSGRRSLFGDEKGFAGVPPTVLVQCLHKGFNHPGDLTTKIGSLQMFMENNGSCEDMGPGAFPVKEVHKITVLDMRLANADRHAGNILIGKEEKNDQAVLIPIDHGYCLPTSFEDCTFEWLYWPQARQPYSPEIIDYIKSLNADEDIALLKFHGWDLRLECARTLQISTMLLKKGVERGMTPFAIGSLMCRESLNKESVIEGIVKAALDSVLPGTSEATFLDAVSEIMDQHLDEITSSIS 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00575 596 ProSiteProfiles Ubiquitin domain profile. 36 109 IPR000626 GO:0005515
Cca11g00575 596 SUPERFAMILY Protein kinase-like (PK-like) 428 592 IPR011009 -
Cca11g00575 596 CDD Ubl_ubiquitin_like 116 186 - -
Cca11g00575 596 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 595 - -
Cca11g00575 596 Gene3D - 114 190 - -
Cca11g00575 596 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 282 575 IPR000403 -
Cca11g00575 596 ProSiteProfiles Ubiquitin domain profile. 114 173 IPR000626 GO:0005515
Cca11g00575 596 Gene3D - 36 111 - -
Cca11g00575 596 SUPERFAMILY Ubiquitin-like 108 189 IPR029071 -
Cca11g00575 596 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 595 IPR044571 -
Cca11g00575 596 Pfam Phosphatidylinositol 3- and 4-kinase 291 540 IPR000403 -
Cca11g00575 596 Pfam Ubiquitin family 42 110 IPR000626 GO:0005515
Cca11g00575 596 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Cca11g00575 596 SUPERFAMILY Ubiquitin-like 26 110 IPR029071 -
Cca11g00575 596 SMART ubq_7 114 188 IPR000626 GO:0005515
Cca11g00575 596 SMART ubq_7 36 109 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00575 Cca-Chr11 9084773 9088294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca11g00575 3 590 Acyl Lipid Metabolism Gene Families AT5G24240 54.300 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00575 - - gmx:100815111 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00575 11 9084773 9088294 Cca11g00575 11 9084773 9088294 ECH
Cca11g00575 11 9084773 9088294 Cca03g03152 03 52934766 52936901 ECH
Cca06g01867 06 34084432 34086270 Cca11g00575 11 9084773 9088294 ECH
Cca03g03152 03 52934766 52936901 Cca11g00575 11 9084773 9088294 PCT