Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01867 ATGTCGGTTGCGGATGTTGCTGTGAGACCGGTTTGCAAAGAATCGGTGCATTGGCAAGGGCATTGCTCTGGAGAATCTATCTTAATATATGTAACCGCAGACGGTGCTGTGACACCAATGCGTGTGTTGGAATCTGATTCCATTGCTTCGGTCAAAATGAGGATTCAATCATGCAAAGGAATTGCAGGGAAGAAGCACAAGTTGGTTTATGGCGGCAGAGAGCTTGTTCGCAAAGACGCACTTATCAAGGACTATGGAGTCACCGCTGGCAATGTTCTTCACTTGGTTCTTCGGCTCTCTGACATGATCTTCATTGTTGTCAGGACCACCTGTGGGAAAGAGTTTGAGTTTCAGATTGATCGGCACAGAAACGTGGGGTATCTTAAGCAACGCATTAAGAAGAAGGGGAAAGGTTTCATTGTTCCCGAGGGGCAAGAGCTTTTTTGCGGTAGGGAGGAGCTTCATGATCAGAGGCTCTTCCGTGACCTGTGCAAGAGTACTGATGAAGGTGTCATTCATTTGGTGGTTAAAAAATCAGCAAAGGTTAAGGCTACATCAGTTCACAAGGATTTGGAGCTTTCAGTTGTTGCTGATGATGGTAATTCTGGTGTGTGGGAGAATCAAATTGAAGAGACACCAAAGATACCACCACGTGATGTAGATTTCTGGTTGGAACCAATATTTGTGAACCCTAAGGTCAATTTTTTTCCTTTCCTTTGGGATATGATTAGCTCCACGTTTGATGGTTTGAAGGAAGGAAACCATCCTATTAGATCTTCTGAGGGCACAGGTGGGACCTACTTCATGCAAGATTCAACAGGTATGGAGTATGTTTCGGTTTTCAAGCCCATGGACGAGGAGCCAATGGCGGTGAATAACCCTCAAGGGCTTCCAATTTCATCCAATGGTGAAGGTTTGAAAAGAGGGACAAAGGTGGGAGAAGGAGCTGTGAGAGAAGTTGCAGCTTATATATTGGATCATCCGATGGATGGGCCAAGAATGGTGTCAGGTGAAGCTGTAGGCTTTGCTGGGGTTCCCCCTACTATTATGGTCCGGTGCTTACACAAATCCTTTAATTACCCAGATGGGTTTGGTTGCTCCTCAAAGCATTTCAAGATGGGGTCCTTGCAGATGTTTATGAACAATGATGGTAATTGTGAGGACCTTGGTCCAGGGGCATTTTCAGTGGAGGAGGTGCATAAGATCACTGTGCTTGATTTAAGAATCGCTAATGCAGATAGGCATGCTGGGAATATATTGTTCAGAAAAGATGAGGGTGGTCGCACTGTGCTCATTCCCATTGATCATGGCTACTGTCTTCCAGAGAAATTTGAGGATTGCACATTTGATTGGCTCTATTGGCCCCAAGCACGTAAACCATACTCTCCTGATATAGTTAAATATATAAAACGTTTGGATGCCGAGAAAGATATAGAGCTTCTGAAATATTATGGTTGGGATGTTCCGGTTGAGTCCCAGGAATCATTGCTACCTGGAATGGGGGAATTTATGTATCTTGAATTTGTCTCAAAGATCATGGATTCCCACCTTGATAAGCTTTCAAAATAG 1569 0.4436 MSVADVAVRPVCKESVHWQGHCSGESILIYVTADGAVTPMRVLESDSIASVKMRIQSCKGIAGKKHKLVYGGRELVRKDALIKDYGVTAGNVLHLVLRLSDMIFIVVRTTCGKEFEFQIDRHRNVGYLKQRIKKKGKGFIVPEGQELFCGREELHDQRLFRDLCKSTDEGVIHLVVKKSAKVKATSVHKDLELSVVADDGNSGVWENQIEETPKIPPRDVDFWLEPIFVNPKVNFFPFLWDMISSTFDGLKEGNHPIRSSEGTGGTYFMQDSTGMEYVSVFKPMDEEPMAVNNPQGLPISSNGEGLKRGTKVGEGAVREVAAYILDHPMDGPRMVSGEAVGFAGVPPTIMVRCLHKSFNYPDGFGCSSKHFKMGSLQMFMNNDGNCEDLGPGAFSVEEVHKITVLDLRIANADRHAGNILFRKDEGGRTVLIPIDHGYCLPEKFEDCTFDWLYWPQARKPYSPDIVKYIKRLDAEKDIELLKYYGWDVPVESQESLLPGMGEFMYLEFVSKIMDSHLDKLSK 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01867 522 Pfam Ubiquitin family 30 99 IPR000626 GO:0005515
Cca06g01867 522 Pfam Ubiquitin family 105 178 IPR000626 GO:0005515
Cca06g01867 522 Pfam Phosphatidylinositol 3- and 4-kinase 262 489 IPR000403 -
Cca06g01867 522 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 491 522 IPR044571 -
Cca06g01867 522 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 492 - -
Cca06g01867 522 SMART ubq_7 103 177 IPR000626 GO:0005515
Cca06g01867 522 SMART ubq_7 27 98 IPR000626 GO:0005515
Cca06g01867 522 Gene3D - 105 192 - -
Cca06g01867 522 Gene3D - 28 104 - -
Cca06g01867 522 CDD Ubl_ubiquitin_like 105 175 - -
Cca06g01867 522 SUPERFAMILY Ubiquitin-like 99 178 IPR029071 -
Cca06g01867 522 SUPERFAMILY Ubiquitin-like 28 100 IPR029071 -
Cca06g01867 522 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 492 IPR044571 -
Cca06g01867 522 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 253 522 IPR000403 -
Cca06g01867 522 ProSiteProfiles Ubiquitin domain profile. 25 102 IPR000626 GO:0005515
Cca06g01867 522 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 491 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01867 Cca-Chr6 34084432 34086270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01867 1 489 Acyl Lipid Metabolism Gene Families AT5G24240 56.262 0.0 562
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01867 - - gmx:100787492 863.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01867 06 34084432 34086270 Cca06g01867 06 34084432 34086270 ECH
Cca06g01867 06 34084432 34086270 Cca11g00575 11 9084773 9088294 ECH
Cca06g01867 06 34084432 34086270 Cca03g03152 03 52934766 52936901 ECH