Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g03152 ATGTCATCAGCCGGTGTCACTACTCTTAGTGTGGTTCCTACTGAGCCATTGTTATCACCAAAGGCATTCCCTTTCCCATCACACTTGTCTTTGGAAGATAAATCCATTTTCATATACCTCTCCTTTTCGGGCTCATTGACTCCAATCCGTGTTATGGAGTGGGATACCATCGAGTCTGTGAAATTCAAAATCCGAAGGTGTGAAAGCCTTCCATTTTTAACAAACAAGCAGAAGTTGGTTTATGCTGGCCGAGAGCTCGCGCGAAGTGATTCGCTGCTCAAGGACTATGGAGTAAGCGATGGAAATGTTTTGCATTTGATAATCAAACTGTCGGATCTTCAAGTCATCAATGTGAAAACTTCTTGTGGGAAGGAGTTCACATTTCAGGTCGAACGAGGCAGGGATGTTGGGTACATAAAGCGACGCATTGCCAAAAGGGAGAAACAATTTGATGATCCTGAGCAGCAGGAACTTGTGTGCAATGGGGAAAGGCTTGAGGACCAGAGGCTTATTGATGATATCTGCTGCAAACATAATGATGCAGTGGTACATCTGTTTGTTAGAAAAAAACATGTTAAAGTTCAGAGGAGACCCCTTGAGTTGTCCATTGTAGCAAGAGATTTGATTGATAAGAAGAAAAATGATGTCAATGGAAATACTTTAAGGAGAAGTTGTGATGTTGGTAAAGAAGATACTATTAGGAAGTCTAATGCTATTCAAAGAGCTGTGTGGAGAAGGGCCCCCGCTCGAGATTTTATTTTGGAGCCAGTTATTATTAACCCAAAAATTGAATTAGCTCCGGCTATTTGGAATATGGTGAACTCCACATATGATGGACTTGATAGTGGAAACTATCCAATCAGATCTGCAGAGGGTACAGGAGGAGCTTACTTTATGCTTGATTCGTTGGGGCAAAAGTATGTGTCTGTTTTTAAGCCTATAGATGAAGAGCCAATGGCTGTGAATAACCCTCGAGGTCTTCCTTTGTCAATAGATGGTGAAGGCTTAAAAAAGGGTACAAGAGTTGGTCAAGGAGCATTCAGGGAAGTTGCAGCCTATGTTCTTGACCATCCATTGAGTGGGCGCCGCACATTATTTGGTGATGAGAAGGGCTTCTCTGGTGTTCCTCCAACATTGATAGTTAAGTGCTTGCATAAAGCATTTAACTACCCTAAAGAATTGACTCCTAAGATTGGCTCCTTGCAAATGTTCACAGAAAACAGTGGAAGTTGTGAAGATATGGGCCCCGGGGCTTTCCCATTAAAGGAAGTACATAAAATTACTGTTTTGGACATAAGACTGGCAAATGCAGATAGGCATGCTGGGAATATTTTGCTCAGCACAGAGGAGGACAACAACCAAACTGTTTTGATTCCAATTGATCATGGATACTGCTTGCCGACAAGCTTTGAAGATTGTACCTTTGAGTGGCTTTACTGGCCCCAAGCTTACCAGCCATACTCCCCAGAAACCATTGATTACGTAAAGTCGCTGGATGCTGAAGAAGATATTGCCCTTTTAAAGTTTCATGGATGGGATCTGCCAATCGAATGTGCCCGCACTCTTAGGATCTCAACCATGCTTTTGAAGAAAGGGGTAGAGAGAGGATTGACCCCCTTTGACATTGGAAGTCTAATGTGCAGGGAATCATTAAACAAAAATTCTGTGATTGAAGAAATAGTACAAGCAGCACTGGATTCTGTTCTTCCTGGCACAAGTGAAGCTACATTGCTGGATGCTGTTTCCCAAATCATGGATATGCACATTGATGAGATCGTCAGATCTCGTTGA 1791 0.4249 MSSAGVTTLSVVPTEPLLSPKAFPFPSHLSLEDKSIFIYLSFSGSLTPIRVMEWDTIESVKFKIRRCESLPFLTNKQKLVYAGRELARSDSLLKDYGVSDGNVLHLIIKLSDLQVINVKTSCGKEFTFQVERGRDVGYIKRRIAKREKQFDDPEQQELVCNGERLEDQRLIDDICCKHNDAVVHLFVRKKHVKVQRRPLELSIVARDLIDKKKNDVNGNTLRRSCDVGKEDTIRKSNAIQRAVWRRAPARDFILEPVIINPKIELAPAIWNMVNSTYDGLDSGNYPIRSAEGTGGAYFMLDSLGQKYVSVFKPIDEEPMAVNNPRGLPLSIDGEGLKKGTRVGQGAFREVAAYVLDHPLSGRRTLFGDEKGFSGVPPTLIVKCLHKAFNYPKELTPKIGSLQMFTENSGSCEDMGPGAFPLKEVHKITVLDIRLANADRHAGNILLSTEEDNNQTVLIPIDHGYCLPTSFEDCTFEWLYWPQAYQPYSPETIDYVKSLDAEEDIALLKFHGWDLPIECARTLRISTMLLKKGVERGLTPFDIGSLMCRESLNKNSVIEEIVQAALDSVLPGTSEATLLDAVSQIMDMHIDEIVRSR 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g03152 596 Gene3D - 30 114 - -
Cca03g03152 596 CDD Ubl_ubiquitin_like 116 186 - -
Cca03g03152 596 Gene3D - 115 191 - -
Cca03g03152 596 Pfam Ubiquitin family 38 110 IPR000626 GO:0005515
Cca03g03152 596 Pfam Ubiquitin family 116 189 IPR000626 GO:0005515
Cca03g03152 596 PANTHER PHOSPHATIDYLINOSITOL 4-KINASE GAMMA 1 594 IPR044571 -
Cca03g03152 596 Pfam Phosphatidylinositol 3- and 4-kinase 292 541 IPR000403 -
Cca03g03152 596 PANTHER PHOSPHATIDYLINOSITOL 3-AND 4-KINASE FAMILY PROTEIN 1 594 - -
Cca03g03152 596 SUPERFAMILY Ubiquitin-like 94 190 IPR029071 -
Cca03g03152 596 ProSiteProfiles Ubiquitin domain profile. 34 109 IPR000626 GO:0005515
Cca03g03152 596 ProSiteProfiles Phosphatidylinositol 3- and 4-kinases catalytic domain profile. 283 576 IPR000403 -
Cca03g03152 596 SUPERFAMILY Protein kinase-like (PK-like) 433 592 IPR011009 -
Cca03g03152 596 ProSiteProfiles Ubiquitin domain profile. 116 173 IPR000626 GO:0005515
Cca03g03152 596 SMART ubq_7 114 188 IPR000626 GO:0005515
Cca03g03152 596 SMART ubq_7 36 109 IPR000626 GO:0005515
Cca03g03152 596 SUPERFAMILY Ubiquitin-like 41 111 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g03152 Cca-Chr3 52934766 52936901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g03152 33 591 Acyl Lipid Metabolism Gene Families AT5G24240 54.417 0.0 621
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g03152 - - gmx:100791631 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g03152 03 52934766 52936901 Cca03g03152 03 52934766 52936901 ECH
Cca11g00575 11 9084773 9088294 Cca03g03152 03 52934766 52936901 ECH
Cca06g01867 06 34084432 34086270 Cca03g03152 03 52934766 52936901 ECH
Cca03g03152 03 52934766 52936901 Cca11g00575 11 9084773 9088294 PCT