Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00260 ATGGACACTAACCATTCCCGCAGGCAGCTTGCTGCAATGAAACAGTCCCTCTTTGATCAGGGATTGCTGGATGAACAATTTATACAACTGGAAGAGTTGCAGGATGATGCAAATCCTAACTTTGTTGAGGAAATTGTGACTCTTCACTACCGTGATTCATCACGGCTTATCTCAAGCATAGAGCAGGCTCTCAAAGAGAGGAATCTGGATTTCAACAAGCTGGACACACTTATGCATCAGTTCAAAGGAAGCAGTTCAAGCATAGGAGCCAAAAAGGTGAAAGCAGAGTGCAATTTGTTCAGGGAATATTGCAGGGCAGGAAATGCAGAAGGATGCATGAGGAGCTTCCAACAATTGAAAAAAGAACATGCTGCACTGAGAAAGAAACTTGAAGCTTATTTTCAGTTGGCGAGGCAAGCTGGACCCCGCGAAACAGCATGTCGCTCCAAATGA 453 0.4459 MDTNHSRRQLAAMKQSLFDQGLLDEQFIQLEELQDDANPNFVEEIVTLHYRDSSRLISSIEQALKERNLDFNKLDTLMHQFKGSSSSIGAKKVKAECNLFREYCRAGNAEGCMRSFQQLKKEHAALRKKLEAYFQLARQAGPRETACRSK 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00260 150 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 4 4 146 - -
Cca11g00260 150 Pfam Hpt domain 50 127 IPR008207 GO:0000160
Cca11g00260 150 PANTHER - 4 146 IPR045871 GO:0000160|GO:0009927|GO:0043424
Cca11g00260 150 Coils Coil 116 136 - -
Cca11g00260 150 Gene3D HPT domain 4 145 IPR036641 GO:0000160
Cca11g00260 150 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 7 139 IPR036641 GO:0000160
Cca11g00260 150 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 133 IPR008207 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00260 Cca-Chr11 3191158 3193339 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00260 K14490 - gmx:100798055 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00260 11 3191158 3193339 Cca10g00217 10 2294775 2296151 ECH
Cca11g00260 11 3191158 3193339 Cca11g00260 11 3191158 3193339 ECH
Cca11g00260 11 3191158 3193339 Cca03g01382 03 32041748 32044891 ECH
Cca10g00217 10 2294775 2296151 Cca11g00260 11 3191158 3193339 PCT