Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g01382 ATGGACAAGACTAGGTTCAAACAACAGGCACTCTTCATGCGAACTTCACTCTTTGATGAGGGGTTTCTTGACGAGCAATTCGTTCAGTTAGAGGAATTGCAAGATGATGTTAATCCCAATTTTGTGGAAGAAATTGTGACCCTTTTCTACACTGACTCTGTTAGACTCATCTACAACATAGAACGAGCACTGATGAGTAATCCTCCCAATTTCACCAAGCTAGATGATTACATGCATCAATTCAAGGGTAGTTGCTCAAGCATCGGAGCAAAGAAGGTGAAAATCGAGTGCACCAAATTCAGTGAATATTGTGCAGCAGAAAACTTTGAGGGATGCTTCAGGACTTTCCAACAAATCAATCTAGAGTATACGACTTTGAAGAAGAAGCTTGAGACCTACTTTCAGTTAATAAAGGGAAGCTACTGA 426 0.4038 MDKTRFKQQALFMRTSLFDEGFLDEQFVQLEELQDDVNPNFVEEIVTLFYTDSVRLIYNIERALMSNPPNFTKLDDYMHQFKGSCSSIGAKKVKIECTKFSEYCAAENFEGCFRTFQQINLEYTTLKKKLETYFQLIKGSY 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g01382 141 Gene3D HPT domain 2 140 IPR036641 GO:0000160
Cca03g01382 141 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 133 IPR008207 GO:0000160
Cca03g01382 141 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 14 138 IPR036641 GO:0000160
Cca03g01382 141 Pfam Hpt domain 44 110 IPR008207 GO:0000160
Cca03g01382 141 PANTHER - 3 138 IPR045871 GO:0000160|GO:0009927|GO:0043424
Cca03g01382 141 PANTHER PSEUDO HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 2-LIKE 3 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g01382 Cca-Chr3 32041748 32044891 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g01382 K14490 - gmx:100780856 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g01382 03 32041748 32044891 Cca03g01382 03 32041748 32044891 ECH
Cca11g00260 11 3191158 3193339 Cca03g01382 03 32041748 32044891 ECH
Cca10g00217 10 2294775 2296151 Cca03g01382 03 32041748 32044891 ECH