Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00217 ATGGACAGAAACAGAACCCATTCCCTCAGACACCTTGCTGCAATCAAACAGTCCCTCTTTGATCAGGGACATCTGGATGAGCAGTTTATCCAACTGGAAGAATTGCAGGATGATGCTAATCCTAACTTTGTTGAGGAAATTGTCACTCTTTACTACCGCGATTCCTCCAGGCTTATCTCTAACTTGGACCAAACACTCGAAAGGAACCCACTGGATTTCAACAAACTGGACACAATCATGCACCAGTTCAAAGGAAGCAGCTCAAGCATCGGAGCCAAAAAGGTGAAAGCAGAATGCACTCTGTTTAGGGAATATTGCAGGGCAGGAAATGCAGAAGGATGCAGGAGGAGCTTCCAACAAATGAAGAAGGAATATGCAGCACTCAGAAAGAAACTTGAAACATATTTTCAGGTGAGTGAGTGGTATTTGTATGCATATATTTGTTGGCTTAGTCTTAGGGAGAGTTCCTTTTTGTTTGTGCAGCTGGCTAGGCAAGCTGGGCCCTTGGAAACAGCATTTCGGCCCAAGTAA 531 0.4444 MDRNRTHSLRHLAAIKQSLFDQGHLDEQFIQLEELQDDANPNFVEEIVTLYYRDSSRLISNLDQTLERNPLDFNKLDTIMHQFKGSSSSIGAKKVKAECTLFREYCRAGNAEGCRRSFQQMKKEYAALRKKLETYFQVSEWYLYAYICWLSLRESSFLFVQLARQAGPLETAFRPK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00217 176 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 40 135 IPR008207 GO:0000160
Cca10g00217 176 Pfam Hpt domain 46 129 IPR008207 GO:0000160
Cca10g00217 176 PANTHER - 7 169 IPR045871 GO:0000160|GO:0009927|GO:0043424
Cca10g00217 176 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 9 138 IPR036641 GO:0000160
Cca10g00217 176 Gene3D HPT domain 1 146 IPR036641 GO:0000160
Cca10g00217 176 Coils Coil 111 131 - -
Cca10g00217 176 PANTHER HISTIDINE-CONTAINING PHOSPHOTRANSFER PROTEIN 4 7 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00217 Cca-Chr10 2294775 2296151 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00217 K14490 - gmx:100800310 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00260 11 3191158 3193339 Cca10g00217 10 2294775 2296151 ECH
Cca10g00217 10 2294775 2296151 Cca10g00217 10 2294775 2296151 ECH
Cca10g00217 10 2294775 2296151 Cca03g01382 03 32041748 32044891 ECH
Cca10g00217 10 2294775 2296151 Cca11g00260 11 3191158 3193339 PCT