Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g00252 ATGGAAAGCAACACAGGAGTAATAGCAAAGAGAGTGTGGCACATGATACGTGTAGCCTTCTTCATGCTGAGAAAAGGCATAACAAAGGGCAAGCTAATGATGCACCTCAACGTCATCCTCAAACGCCGCAGCAAGCTCGCCGGCAAAGCCATCGCCAACCTCATGTTCCACCACCACCACGCCGCCTCCGACACCCGCCTCCAATTCTCCGCCGCCAGGGAGTACGAGTTCAGCTGCACCAACACTCCCAACAACTTGTTCACCAAACGCCACCGCCACAACCCCTTCTTCACCTGCGCCCACGCGCCTCCCACCCTTGACGACGACGCCGCCACCGCTAACGCCATCAAGAGCGTGTTGGAGATGCTCAACAACGAGGCCGCCGTGGAAGCCTCGCCAGCAGCGGCTCTTCCTGGGTTGGGACGAAGCCCTTTGGTGGTGAGGCAGCTGAGGGTGACTGACTCTCCCTTCCCTCTTGCTAACTCCGAGGATGACAGGGACCACCAAGTGGATAAGGCTGCTGAAGAGTTCATAAGGAGGTTCTATAAAAACTTGAAGAACCAAACTTAA 570 0.5596 MESNTGVIAKRVWHMIRVAFFMLRKGITKGKLMMHLNVILKRRSKLAGKAIANLMFHHHHAASDTRLQFSAAREYEFSCTNTPNNLFTKRHRHNPFFTCAHAPPTLDDDAATANAIKSVLEMLNNEAAVEASPAAALPGLGRSPLVVRQLRVTDSPFPLANSEDDRDHQVDKAAEEFIRRFYKNLKNQT 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g00252 189 Pfam Cotton fibre expressed protein 168 188 IPR008480 -
Cca11g00252 189 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 1 188 - -
Cca11g00252 189 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 1 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g00252 Cca-Chr11 3062380 3063210 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g00252 - - gmx:100801941 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00252 11 3062380 3063210 Cca10g00212 10 2219367 2220116 ECH
Cca09g02629 09 51921883 51923023 Cca11g00252 11 3062380 3063210 ECH
Cca08g00098 08 1276400 1277485 Cca11g00252 11 3062380 3063210 ECH
Cca11g00252 11 3062380 3063210 Cca11g00252 11 3062380 3063210 ECH
Cca10g00212 10 2219367 2220116 Cca11g00252 11 3062380 3063210 PCT