Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g00098 ATGGAAATCAAAccaggctcaggcccaggcccaggcccaagtccaagcccaCAAGCAATAGCCGCAAGGAAGCTATGGAACATCGTGCGCATCGTGTTCCTCATGCTCAGAAAAGGCATCGCCAAGAGCAAAGCCGCCGTCGATCTCAACCTGTTACTCAAACGCGGCAAGCTCGCCGCCGCCAAAGCCATAGCCGGCGCCGCCGTGACGCTGCACGGTGACCGAAACAACGCCGTGGTGCAGCCGCGCCGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCGCTGTTCCCCTTCAAGCGCAAGCACCAAAGGTCCACGCGCTGCCACGACGACGTTTTGAAGATGCTGGAGATGCTCAACAACGATAACAAGGTGGTGGAGGCTTCTCCGTTGCCCTGGTTCGGGAAGAGCACTCACCTTGGGAGAAAACTCAGAGTCACGGACTCGCCGTTTCCGGTGAAGgacgaggaaagagacgaccacgacgacgacggcgaGGTTGATTTGGCGGCGGAGGAGTTTATTAAGAGGTTCTATAGGGACCTCAATTTGCAAAGGAAAATGGCTGCCATTGAGTCACCCTACCATTACAGTTCCTGGGACAGATGA 612 0.4918 MEIKPGSGPGPGPSPSPQAIAARKLWNIVRIVFLMLRKGIAKSKAAVDLNLLLKRGKLAAAKAIAGAAVTLHGDRNNAVVQPRRDYEFSCSNSPALFPFKRKHQRSTRCHDDVLKMLEMLNNDNKVVEASPLPWFGKSTHLGRKLRVTDSPFPVKDEERDDHDDDGEVDLAAEEFIKRFYRDLNLQRKMAAIESPYHYSSWDR 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g00098 203 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 18 203 - -
Cca08g00098 203 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 18 203 - -
Cca08g00098 203 Pfam Cotton fibre expressed protein 165 189 IPR008480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g00098 Cca-Chr8 1276400 1277485 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g00098 - - gmx:100783043 197.978
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g00098 08 1276400 1277485 Cca11g00252 11 3062380 3063210 ECH
Cca08g00098 08 1276400 1277485 Cca10g00212 10 2219367 2220116 ECH
Cca08g00098 08 1276400 1277485 Cca08g00098 08 1276400 1277485 ECH
Cca09g02629 09 51921883 51923023 Cca08g00098 08 1276400 1277485 PCT