Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02629 ATGGAAATAGAGGGAAGCAGTCCCGTGGTGGCAAAGAAGCTGTGGAGCATCATGCGACTCATGTTCTTCATGCTGCGAAAGGGCATAGCCAAGAGCAAAATAATGGCCGACTTCAACCTTCTCCTCAAACGCGGAAAAAAGGCCTTACTCAACAACCACCATTACTACATGCCCTTCTTCACCTTCCGCTCCCACGGCAACGCCAACACCTTCATCTCCCCACGCGACTACGAGTTCAGCTGCAGCAACAGCCCCGCCATCCCCTTCAAACGCCGCAACAACCGCCCTCTCTCCGCCCCCTCCATCCCCTTCAACACCAATTCCCCCTTCCCAGCCTTCCGAAACAGCCCCATTGGGAAACAACTTCGGGTCACGGATTCCCCCTTCCCTCTAACGGACCAAGGAGATACTGATACCTATGTCGACGTCGCCGCCGAACAATTCATTCAAAACTTCTATAAAGACCTCTACTTGCAAAGAAAAATGGCACCTCTTGAGTCTCCCTATCATACTTGCTGGAACAGATGA 528 0.5227 MEIEGSSPVVAKKLWSIMRLMFFMLRKGIAKSKIMADFNLLLKRGKKALLNNHHYYMPFFTFRSHGNANTFISPRDYEFSCSNSPAIPFKRRNNRPLSAPSIPFNTNSPFPAFRNSPIGKQLRVTDSPFPLTDQGDTDTYVDVAAEQFIQNFYKDLYLQRKMAPLESPYHTCWNR 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02629 175 Pfam Cotton fibre expressed protein 141 162 IPR008480 -
Cca09g02629 175 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 3 90 - -
Cca09g02629 175 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN-RELATED 106 170 - -
Cca09g02629 175 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 3 90 - -
Cca09g02629 175 PANTHER AVR9/CF-9 RAPIDLY ELICITED PROTEIN 106 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02629 Cca-Chr9 51921883 51923023 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02629 - - gmx:100305871 213.386
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02629 09 51921883 51923023 Cca11g00252 11 3062380 3063210 ECH
Cca09g02629 09 51921883 51923023 Cca10g00212 10 2219367 2220116 ECH
Cca09g02629 09 51921883 51923023 Cca09g02629 09 51921883 51923023 ECH
Cca09g02629 09 51921883 51923023 Cca08g00098 08 1276400 1277485 PCT