Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00808 ATGAGTTATGGAAGAAGCAAGGGTTGGATTGTAGCAGCTAGTGTTGGAGCAGTGGAGGCTTTGAAGGACCAACTGGGTGTGTGCAGATGGAATTATGCCATGAGGTGTGCTCAACAACACCTCAAAAACCATGTTGGATCCTTGTCTCAAGCAAAGAATGTTTCTTCTGCTGGTATTGTTGCAACCAAATTAAAGGGTGAGAAGGCCAAGCAGGCTGAGGAGTCCTTGAGGACTGTTATGTACTTGAGCTGCTGGGCTCCCAACTGA 267 0.4719 MSYGRSKGWIVAASVGAVEALKDQLGVCRWNYAMRCAQQHLKNHVGSLSQAKNVSSAGIVATKLKGEKAKQAEESLRTVMYLSCWAPN 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00808 88 PANTHER WOUND-RESPONSIVE FAMILY PROTEIN 5 88 - -
Cca10g00808 88 PANTHER DUF3774 DOMAIN PROTEIN-RELATED 5 88 IPR022251 -
Cca10g00808 88 Pfam Wound-induced protein 11 87 IPR022251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00808 Cca-Chr10 9328596 9329374 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00808 - - gmx:100305628 144.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00808 10 9328596 9329374 Cca10g00808 10 9328596 9329374 ECH
Cca10g00808 10 9328596 9329374 Cca04g01079 04 12080728 12085793 PCT
Cca04g01080 04 12088229 12089242 Cca10g00808 10 9328596 9329374 PCT