Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g01079 ATGAGTTGTTCAGCGCACAAAGCTTGGATTGCAGCAACTAGTGTTGGAGTTGTGGAGGCCTTGAAGGACCAGGGTCTGTGTAGGTGGAATCACGCTTTCAAATCTGCTCAACATGTCATCAAAACCCATCTTGGATCTTTGTCACAAGCAAAGAACTTTTCCTCTTCTTCTATGGTTTCTACTTCTAGCAGATTAAAGGGGAAGCAGTCAGAGGAATCATTGAGGACTGTTATGTACTTAAGCTGTTGGGGTCCCAATTAG 261 0.4406 MSCSAHKAWIAATSVGVVEALKDQGLCRWNHAFKSAQHVIKTHLGSLSQAKNFSSSSMVSTSSRLKGKQSEESLRTVMYLSCWGPN 86
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g01079 86 PANTHER WOUND-RESPONSIVE FAMILY PROTEIN 4 86 - -
Cca04g01079 86 PANTHER DUF3774 DOMAIN PROTEIN-RELATED 4 86 IPR022251 -
Cca04g01079 86 Pfam Wound-induced protein 12 85 IPR022251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g01079 Cca-Chr4 12080728 12085793 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g01079 - - gmx:100777823 142.124
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00808 10 9328596 9329374 Cca04g01079 04 12080728 12085793 PCT
Cca04g01079 04 12080728 12085793 Cca10g00807 10 9325675 9326561 PCT