Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00360 ATGATGGCTTTTCTGTTTGCGTTTGTTGCAATTGTGTTGTGGGATTGTGCTGCGGGTAAAGAGTGCACAAACAATCATGCTCAATCACATGCTCTTCGTTACCAGTTATTAACATCCATGAATGAAACTTGGAGCATAATGTCACATTATGATTTGAAGCCAAAGGATGACAACCACGTATGGGCTGATTTGCTTCCAAGGAAGTTGTTGAAAGAGGAAGAGCAACATGATTCGGATATGATGTTCAGGAAAATTAGGAAATTGAAGCCACCCCAACCCCAGGGTTTTCTGAAACAAGTGTCTCTGCATGATGTGAGATTGCATGAAGGTTCAATCCATGCTCAGGCACAACACACAAACTTAGAGTATTTGTTGATGTTAGATGTGGACAGGTTACTCTGGAGCTTTAGGAAAACAGCTGGTCTTCCAACTCCTGGAACACCATATGGAGGGTGGGAAGATCCAAAAATGGAGCTTCGGGGTCATTTTGTTGGGCATTATTTGAGTGCATCAGCTTTAATGTGGGCCAGCACACATAATGATACCTTGAAGAAGAAAATGTCAGCTCTTGTTGCCGATCTTTCTGTCTGTCAGGAGAAAATTGGCACAGGATATCTCTCTGCATTTCCATCAGAATTTTTTGATCGATTTGAAGCTACTAAGTATGTTTGGGCTCCCTATTACACCATTCACAAGATCTTGGATGGCCTTTTGGATCAACATTCTATAGCCGGAAATCCTCAAGCTTTAAAAATAGTGACATGGATGGTAGACTACTTTTACAACCGAGTACACAATGTTATAACAAAATTTAGTGTAAGTAGACACTATCAATCACTGAATGAGGAAACTGGAGGCATGAATGATTTCCTTTACAAACTATACAGCATAACGGGAGATCAAAGGCATCTATTGCTAGCCCACCTTTTTGACAAACCATGCTTTTTAGGGTTGCTTGCAGTGAAGGCTAATGATATAGCTGATTTTCATGCTAATACACATATCCCGGTGGTTGTTGGATCTCAAGTACGCTATGAAGTCACTGGTGATCCACTTTATAAGGAAATAGGAACATTCTTTATGGATCTTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTCAACGAATTTTGGGGTGATCCAAAAAGAATGGCAGACGCCCTAAAATCAACTGAGAATCAGGAATCGTGCACAACTTACAATATGTTGAAGGTTTCACGGCACCTGTTTACATGGACCAAAAAGGAATCATATGCAGACTATTATGAGCGTGCCTTAACAAATGGTATACTAAGCATTCAAAGAGGAACAGAACCTGGAGTTATGATATATATGCTTCCACAAGGTCGTGGGGTTTCCAAGGCTAAAACTAGCTTTGGTTGGGGAACCAAGTTTGATAGTTTCTGGTGCTGCTATGGAACAGGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGGAAGGGGAAAATCCTACTCTTTACATCATCCAGTATATATCAAGCTCATTTAATTGGAAATCTGGACAAATTATCCTTAATCAGACGGTTGTTCCAGCTGCTTCATGGGATCCTTTCCTACGAGTGTCATTTACATTTTCTCCTACTAAGAATACTGGTACTTCATCTACACTAAACTTCCGACTACCAACTTGGACATATAAGGATGGTGCAAAAGGCCTTTTAAATAATGAGACTTTATCTCTGCCAACCCCAGGTAATTTTTTGTCAATCACACGAAAATGGAATGCTGGTGACAAGCTAAGCCTTCAATTGCCCATTACCCTCAGAACAGAGGCCATAAAAGATGACAGGTCTAAATATGCCTCTATTCAAGCAATTCTTTATGGTCCGTATCTTCTTGCTGGTCACACCACTGGTGATTGGGACATTAAAGGTGCACCAAATGCATCTGTAGCAAACTGGATTACTCCAATTCCAGCCACCTACAATAGTCGATTATTCTATTTTTCTCAAGACTCTACAAAGTCAACTTCTTGTTTGACAAAGTTAAACCAATCATTAGCAATGAAAAAATTACCTGAGCCTGGAACTGATTTGGCTCTTCATGCAACTTTTAGAGTGATCCAAGTAAAATCTTCCGGAAAGTTTACCACATTGACAGATGCTATTGGTAAATCAGTGATGTTTGAACCATTTGGTCATGCGGGAATGCGAGTGATTCACCAAGGAATACAACATCCTCTTACAATTGTAGGCACTTCCTCGAGTGGATCATCTTCTGTCTTTGTTGTGGTACCAGGATTTGATGGTCGAAATGAAACCATATCTTTGGAATCCAAAAGCCATAATGGTTGCTTCGTGCATAGTGGTTTGCATTCTGGTGGAGGAGTGAAACTCATTTGTAAGACTGGTTCTGATGCCATATTTAACCAAGAAGCAAGTTTTATTGCCAAGAGAGGAATAAGCAAATATAATCCTATCAGTTTTATGGCCAAAGGGATAAACAGAAATTTTCTTCTAGAGCCTTTATTCGCCTTCAGAGATGAGTCTTATTCGGTTTATTTCAACATTAAAGGTTGA 2562 0.3981 MMAFLFAFVAIVLWDCAAGKECTNNHAQSHALRYQLLTSMNETWSIMSHYDLKPKDDNHVWADLLPRKLLKEEEQHDSDMMFRKIRKLKPPQPQGFLKQVSLHDVRLHEGSIHAQAQHTNLEYLLMLDVDRLLWSFRKTAGLPTPGTPYGGWEDPKMELRGHFVGHYLSASALMWASTHNDTLKKKMSALVADLSVCQEKIGTGYLSAFPSEFFDRFEATKYVWAPYYTIHKILDGLLDQHSIAGNPQALKIVTWMVDYFYNRVHNVITKFSVSRHYQSLNEETGGMNDFLYKLYSITGDQRHLLLAHLFDKPCFLGLLAVKANDIADFHANTHIPVVVGSQVRYEVTGDPLYKEIGTFFMDLVNSSHTYATGGTSVNEFWGDPKRMADALKSTENQESCTTYNMLKVSRHLFTWTKKESYADYYERALTNGILSIQRGTEPGVMIYMLPQGRGVSKAKTSFGWGTKFDSFWCCYGTGIESFSKLGDSIYFEEEGENPTLYIIQYISSSFNWKSGQIILNQTVVPAASWDPFLRVSFTFSPTKNTGTSSTLNFRLPTWTYKDGAKGLLNNETLSLPTPGNFLSITRKWNAGDKLSLQLPITLRTEAIKDDRSKYASIQAILYGPYLLAGHTTGDWDIKGAPNASVANWITPIPATYNSRLFYFSQDSTKSTSCLTKLNQSLAMKKLPEPGTDLALHATFRVIQVKSSGKFTTLTDAIGKSVMFEPFGHAGMRVIHQGIQHPLTIVGTSSSGSSSVFVVVPGFDGRNETISLESKSHNGCFVHSGLHSGGGVKLICKTGSDAIFNQEASFIAKRGISKYNPISFMAKGINRNFLLEPLFAFRDESYSVYFNIKG 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00360 853 PANTHER PROLINE-TRNA LIGASE (DUF1680) 9 852 - -
Cca10g00360 853 SUPERFAMILY Six-hairpin glycosidases 160 454 IPR008928 GO:0005975
Cca10g00360 853 Gene3D - 714 845 - -
Cca10g00360 853 SUPERFAMILY AbfB domain 720 835 IPR036195 GO:0046373|GO:0046556
Cca10g00360 853 Pfam Beta-L-arabinofuranosidase, GH127 104 628 IPR012878 -
Cca10g00360 853 PANTHER - 9 852 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00360 Cca-Chr10 3807135 3813961 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00360 K09955 - gmx:100791803 1305.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00360 10 3807135 3813961 Cca10g00360 10 3807135 3813961 ECH
Cca10g00360 10 3807135 3813961 Cca04g00561 04 5604513 5611608 PCT
Cca04g00560 04 5553903 5560587 Cca10g00360 10 3807135 3813961 PCT