Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00560 ATGGAGActtatgtgtttgtgtttgtggctcttgtgctgtgcacttgtgctGCTGGTAAAGAGTGCACAAACATTCCTACACAATCACATACGTTCAGGAATGAGCTAATGACATCCAAGAATGAAACGTGGAAGGCTGAAGTGATGTCTCACTACCATTTGACACCAACGGATGAATCTGCTTGGGCTGATTTGCTGCCGAGGAAGTTGTTGACAGAACAAGGCCAACATGATTGGGGGGTTATGTACAAGAAAATTAAGAGCATGGGTGTGTTCAATGCACCTCAAGGCTTTCTCAAAGAAGTGCCTCTTCAAGATGTGAGGTTGCATGAGGATTCCATCCATGGTAGAGCACAGCAGACAAATTTGGAGTATTTGTTGATGTTAGATGTGGATAGTTTGATTTGGAGCTTCAGGAAGACAGCTGGTTTAGCCACTCCTGGGACTCCTTATGGAGGATGGGAAGATCCGATAAAAAGTGAGGTCCGGGGTCATTTTGTTGGGCATTACTTGAGTGCATCAGCTCTAATGTGGGCCAGCACACAGAATGATAGCCTGAAGCAGAAAATGTCATATCTTGTTGCTGGTCTGTCTTCCTGTCAGGAGAAAATTGGAACTGGATATCTGTCTGCATTTCCATCTAAGCTTTTTGATCGATTTGAAGCTATTCGAAAAGTTTGGGCTCCCTATTATACCATTCACAAGATCTTGGCTGGTCTCTTGGATCAACATACTTTTGCTGGAAACCCTCAAGCTCTAAAAATGGCAACATGGATGGTTGATTACTTCTACAACAGAGTACTGAATGTAATAACAAAGTACACCGTAAATAGACACTATCAATCACTGAATGAGGAAACTGGAGGAATGAATGATGTCCTTTACAGATTATACAGCATAACGGGGGATTCTAAGCATCTGTTGTTGGCTCACCTTTTTGATAAACCATGTTTTCTAGGGTTGCTTGCAGTGCAGGCCAATGACATAGCTGATTTTCATGCTAATACACATATCCCAATAGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGTGATCCACGTTATAAGGAAATTGGGACATTCTTTATGGACCTCATAAACTCATCTCACAGCTATGCAACTGGAGGGACATCCGTCAATGAGTTCTGGAGTAATCCAAAGAGAATAGCAGACAATATAAAAACGACAGAGAACGAAGAATCATGCACCACTTATAATATGTTGAAGGTTTCACGCCACCTGTTTAGATGGACCAAAGAAGTCTCTTATGCAGACTATTATGAACGTGCCTTAACCAATGGTGTTCTCAGCATTCAAAGAGGAACAGATCCTGGAGTGATGATTTATATGCTTCCATTAGGTCTTGGGGTTTCCAAGGCTAAAACTTTGCATAGTTGGGGAACACCATTTAATGATTTCTGGTGCTGCTATGGAACAGGAATTGAATCGTTCTCAAAGCTGGGGGATTCTATATATTTTGAAGAGGAAGGGAAAGATCCTACACTTTACATCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGCAAAGTTTTGCTCAATCAGACAGTTGTTCCAGTTTCTTCATGGGATCCTTACCTACAAGTGACATTTACATTTTCTCCTGTAGAGAGTACTTTGTCTACATTGAACCTTAGACTACCAAGTTGGAGTCGTCTGGATGGTGCCAAGGGGATATTAAATGCTGAAAGGTTATCTCTGCCAACTCCAGGAAATTATTTGTCAATCACACGACAATGGAGTGCTAGTGACAAGCTCACCCTTCAGCTGCCAATTACCATAAGAACAGAGGCCATAAAAGATGACAGACCCGAATATGCATCTATTCAAGCAATTCTTTATGGTCCTTATCTTCTTTCTGGTCATACAAGTGGTGGTGATTGGAACCTTAAACCTGAGGCCAACAATGGAGACTGGATTACTCCTGTTCCTGCCTGTTACAATAGTCAACTAGTTTCTTTATCCCAAAAAATTAAAAAATCAACTTTTGTTTTGGTAAATTCAAACCAATCACTTGCAATGCAAAAATTGCCTAAACCTGGAACTGATTTGGCTCTTCACGCTACCTTTAGGCTTGTCCTAAAAGAACCTTCCTCAAAATTTTCAACATTGGTAGATGCTAATGGTAGATCAGTGATATTAGAACCATTTGATCTTCCTGGAATGAATGTGATTCACCAAGGAGCAGACAAACCACTTCTCATTGTAGATTCTTCCAATGGTGGACCATCTTCTGTTTTTCTAATGGTACCAGGATTGAATGGTAGAAATGAAACCATATCTTTAGAATCCCAAAGCAACAAGGGCTGTTACATATATAGTGGCATGAGTTCTAAAGCAGGAGTGAAGCTCAGTTGCAAAACTGATTCTGATGCTACTTTTAATGAAGCAACAAGCTTTGTTACTCGGAAAGGATTGAGCCAATACCATCCTATCAGTTTTGTGGCTAAAGGGATAAACAGGAATTTTCTTTTGGAGCCATTATTCTCATTCAGAGATGAACACTATACAGTTTATTTCAAAATCTAG 2556 0.3959 METYVFVFVALVLCTCAAGKECTNIPTQSHTFRNELMTSKNETWKAEVMSHYHLTPTDESAWADLLPRKLLTEQGQHDWGVMYKKIKSMGVFNAPQGFLKEVPLQDVRLHEDSIHGRAQQTNLEYLLMLDVDSLIWSFRKTAGLATPGTPYGGWEDPIKSEVRGHFVGHYLSASALMWASTQNDSLKQKMSYLVAGLSSCQEKIGTGYLSAFPSKLFDRFEAIRKVWAPYYTIHKILAGLLDQHTFAGNPQALKMATWMVDYFYNRVLNVITKYTVNRHYQSLNEETGGMNDVLYRLYSITGDSKHLLLAHLFDKPCFLGLLAVQANDIADFHANTHIPIVVGSQMRYEITGDPRYKEIGTFFMDLINSSHSYATGGTSVNEFWSNPKRIADNIKTTENEESCTTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGLGVSKAKTLHSWGTPFNDFWCCYGTGIESFSKLGDSIYFEEEGKDPTLYIIQYISSSFNWKSGKVLLNQTVVPVSSWDPYLQVTFTFSPVESTLSTLNLRLPSWSRLDGAKGILNAERLSLPTPGNYLSITRQWSASDKLTLQLPITIRTEAIKDDRPEYASIQAILYGPYLLSGHTSGGDWNLKPEANNGDWITPVPACYNSQLVSLSQKIKKSTFVLVNSNQSLAMQKLPKPGTDLALHATFRLVLKEPSSKFSTLVDANGRSVILEPFDLPGMNVIHQGADKPLLIVDSSNGGPSSVFLMVPGLNGRNETISLESQSNKGCYIYSGMSSKAGVKLSCKTDSDATFNEATSFVTRKGLSQYHPISFVAKGINRNFLLEPLFSFRDEHYTVYFKI 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00560 851 Gene3D - 711 841 - -
Cca04g00560 851 PANTHER - 8 851 - -
Cca04g00560 851 PANTHER PROLINE-TRNA LIGASE (DUF1680) 8 851 - -
Cca04g00560 851 Pfam Beta-L-arabinofuranosidase, GH127 106 628 IPR012878 -
Cca04g00560 851 SUPERFAMILY AbfB domain 718 834 IPR036195 GO:0046373|GO:0046556
Cca04g00560 851 SUPERFAMILY Six-hairpin glycosidases 150 475 IPR008928 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00560 Cca-Chr4 5553903 5560587 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00560 K09955 - gmx:100783150 1512.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00560 04 5553903 5560587 Cca10g00360 10 3807135 3813961 PCT