Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca04g00561 ATGGAGGCTGttgtgtttgtgtttatgtcccttctgttgtgtggttgtgCTGTTAGTAAAGAGTGCACAAACATTCCAACACAGTCTCACACATTGAGGTACGAGCTATTGGCATCCAAGAATGAAACATGGAAGGCACAGGTGATGTCTCACTACCATTTGACGCCAACGGATGAGTCTGTTTGGGCTGATTTGCTGCCAAGGAAGTTGTTGACAGAACAACACCAAAATGAATGGGGGGCTATGTATAGGGAAATTAAGAACATGGGTGTGTTCAATGCACCTCAAGGCTTTCTCAAAGAAGTGCCTCTTCAGGATGTGAGGTTGCATGAGGATTCTATCCATGGTAGAGCACAGCAGACGAATATGGAGTATCTGTTGATGTTGGATGTTGATAATTTGCTTTGGAGCTTCAGGAAGACAGCTGGTCTAGCCACTCCTGGGAAACCTTATGGAGGATGGGAAGGTCCAGATGTTGAGCTCAGGGGTCATTTTGTTGGGCATTACTTGAGCGCATCAGCTCTATCGTGGGCTAGCACACAGAATGATAGCCTGAAGCAGAAAATGTCATCTCTTGTGGCTGGTCTGTCTGCCTGTCAGCAGAAAATTGGAACTGGATATCTATCTGCATTTCCATCGGAGTGGTTTGATCGATTTGAAGCTATTCAACCTGTTTGGGCTCCCTATTATACCATTCACAAGATTTTGGCTGGTCTCTTGGATCAATATACTTTTGCTGGAAACCCTCAAGCTCTAAAAATGGTAACATGGATGGTTGATTACTTCGACAACAGAGTTCGGAATGTAATAACAAAGTACACAGTAAATAGACACTATATATCAATGAATGAGGAAACTGGAGGAATGAATGATGTCCTATACAGACTATACAGCATAACGGGGGATTCTAAGCATCTATTGTTGGCTCACCTTTTTGACAAGCCGTGCTTTCTAGGGTTGCTTGCAGTGCAGGCTAATGACATAGCTGATTTGCATGCTAATACGCATATTCCAATTGTTGTTGGATCTCAAATGCGGTATGAAATCACAGGCGATCCACTTTATAAGGAAATTGGAACATTCTTTATGGACCTCGTAAACTCTTCTCACAGCTATGCAACGGGAGGGACATCAGTCAGCGAGTTCTGGAGTAATCCTAAGAGAATAGCAGACAATTTAGGAACGACAGAGAATGAAGAATCGTGCACAACTTATAACATGTTAAAGGTTTCACGCCACCTGTTTAGATGGACCAAAGAAGTCTCTTATGCAGACTATTATGAACGTGCCTTAACCAATGGTGTTCTCAGCATTCAAAGAGGAACAGATCCTGGAGTGATGATTTATATGCTTCCACTAGGTCTTGGGGTTTCCAAGGCTAAAACTGGACATAGTTGGGGAACACCATTTGACTCTTTCTGGTGCTGCTATGGAACAGGAGTTGAATCATTCTCAAAGCTGGGGGATTCTATCTATTTCGAAGAGGAAGGAAAAAATCCTACACTTTACATCATTCAGTACGTATCAAGCTCATTTAATTGGAAATCTGGCAAAATTTTGATCAATCAGACAGTTGTTCCAGCTGCTTCATGGGATCCTTACCTACGAGTGACATTTACATTTTATCCTGTTGAGAGTACTTTGTCTACATTGAACTTTCGACTACCAAGTTGGACTCGTCTGGATGGTGCCAAGGGGATATTAAATGCTGAAACTTTATCTCTGCCAACTCCAGGAAACTTTTTGTCAATCACAAGACAGTGGAGTGCTAGTGACAAGCTGACCCTTCAGCTGCCCCTTACCACAAGAACAGAAGCCATAAAAGATGACAGGCCTGAATATGCATCAGTTCAAGCAATTCTCTATGGTCCTTATCTTCTGGCCGGTCATACAACAGGTGGTGATTGGGACCTTAAAACCGGGGCCGACAATGCAAACTGGATTACTCCTATTCCTGCCACTTACAATAGTCAACTTGTTTCTTTATTCCAAGACTTTGGAGAATCAACTTTTGTTTTGGCAAATTCAAACCAGTCTCTTGCAGGGCAAAAATTGCCTGAATCTGGCACTGATTCGGCTGTTCAAGCAACCTTTAGGCTTGTCCTACAAGAATCTTCCCCAAAATTTTCAGCATTGGCAGATACTAAAGATAGACCAGTGGTGTTGGAACCATTTGATCTTCCTGGGATGAATGTGATTCACCAAGGAGCAGACAAACCTCTTCTCATTGCAGATTCTTCCAATGGTGGACCATCTTCTGTTTTTCTTGTGGTACCAGGATTGGATGGTAGAAATGAAACCATATCTTTAGAATCCCAAAGCAATAAGGGCTGTTATGTGTATAGTGGTATTAGCTCAAATGCAGGAGTCAAGCTCAGTTGCAAATCTGATTCTGATGCTACTTTTAACCAAGCAACAAGCTTTGTTTCTCGGGAAGGATTGAGCCAATACCATCCTATCAGTTTTGTGGCTAAAGGGGCAAAGAGGAATTTTCTTTTGGAGCCATTATTCTCATTCAGAGATGAACACTACACAGTTTATTTCAATATTCACGATTGA 2559 0.4162 MEAVVFVFMSLLLCGCAVSKECTNIPTQSHTLRYELLASKNETWKAQVMSHYHLTPTDESVWADLLPRKLLTEQHQNEWGAMYREIKNMGVFNAPQGFLKEVPLQDVRLHEDSIHGRAQQTNMEYLLMLDVDNLLWSFRKTAGLATPGKPYGGWEGPDVELRGHFVGHYLSASALSWASTQNDSLKQKMSSLVAGLSACQQKIGTGYLSAFPSEWFDRFEAIQPVWAPYYTIHKILAGLLDQYTFAGNPQALKMVTWMVDYFDNRVRNVITKYTVNRHYISMNEETGGMNDVLYRLYSITGDSKHLLLAHLFDKPCFLGLLAVQANDIADLHANTHIPIVVGSQMRYEITGDPLYKEIGTFFMDLVNSSHSYATGGTSVSEFWSNPKRIADNLGTTENEESCTTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGLGVSKAKTGHSWGTPFDSFWCCYGTGVESFSKLGDSIYFEEEGKNPTLYIIQYVSSSFNWKSGKILINQTVVPAASWDPYLRVTFTFYPVESTLSTLNFRLPSWTRLDGAKGILNAETLSLPTPGNFLSITRQWSASDKLTLQLPLTTRTEAIKDDRPEYASVQAILYGPYLLAGHTTGGDWDLKTGADNANWITPIPATYNSQLVSLFQDFGESTFVLANSNQSLAGQKLPESGTDSAVQATFRLVLQESSPKFSALADTKDRPVVLEPFDLPGMNVIHQGADKPLLIADSSNGGPSSVFLVVPGLDGRNETISLESQSNKGCYVYSGISSNAGVKLSCKSDSDATFNQATSFVSREGLSQYHPISFVAKGAKRNFLLEPLFSFRDEHYTVYFNIHD 852
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca04g00561 852 Gene3D - 712 843 - -
Cca04g00561 852 PANTHER PROLINE-TRNA LIGASE (DUF1680) 9 851 - -
Cca04g00561 852 Pfam Beta-L-arabinofuranosidase, GH127 106 628 IPR012878 -
Cca04g00561 852 SUPERFAMILY Six-hairpin glycosidases 145 438 IPR008928 GO:0005975
Cca04g00561 852 PANTHER - 9 851 - -
Cca04g00561 852 SUPERFAMILY AbfB domain 752 833 IPR036195 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca04g00561 Cca-Chr4 5604513 5611608 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca04g00561 K09955 - gmx:100783150 1544.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g00561 04 5604513 5611608 Cca04g00561 04 5604513 5611608 ECH
Cca10g00360 10 3807135 3813961 Cca04g00561 04 5604513 5611608 PCT