Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00126 ATGATTATGCTCTGCTATACTTTGATTCTCATTGCTCATAAAGGTAGTAGAACCACTCAAAAAGCTTTTGAGTTTGGGAAGACACATGTAGTGAGGCCCAAAGGAAAACACCAAGCCACTATAGTTTGGTTGCATGGTCTTGGTGATAATGGATTGAGCTCATCTCAACTCCTTGAATCCCTTCCGCTTCCAAATATAAAATGGATTTGCCCAACTGCTCCTACCCGTCCTGTGGCGATACTTGGTGGCTTTTCCTGTACTGCATGGTTTGATATGGGAGAACTTTCAGAAGATGGTCCAGATGATTGGGAGGGTTTGGATGCCTCAGCAGCACATATTGCTAACTTGTTGTCAACAGAGCCAACTGATGTGAAAGTTGGTATTGGAGGCTTCAGCATGGGTGCAGCAATAGCCCTATACTCTGCAACTTGTTTTGCCATGGGAAGGTATGGAAATGGCATCCCATACCCTGTTAACTTAAGAGCAGTTGTTGGATTAAGTGGTTGGCTTCCCGGATCAAGGAGCTTAATGAACAAGATAGAAGTGTCACATGAAGCAAGAAAGCGAGCAGCTTCGTTGCCCATTTTGTTGTGCCATGGAATTAGTGATGATGTAATCCTTTGCAAATACGGAGAAAAATCTGTTCAATCCTTGTGTTCAGCGGGGTTTCGGCATGTTGTGTTCAAATCCTATGATGGGCTTGGTCATTACACAGTTCCTAAAGAGATGGATGAGGTTTGCACTTGGTTTAATTTAAGGCTGGGGCTTGAGGGGTCCTCATAA 783 0.4393 MIMLCYTLILIAHKGSRTTQKAFEFGKTHVVRPKGKHQATIVWLHGLGDNGLSSSQLLESLPLPNIKWICPTAPTRPVAILGGFSCTAWFDMGELSEDGPDDWEGLDASAAHIANLLSTEPTDVKVGIGGFSMGAAIALYSATCFAMGRYGNGIPYPVNLRAVVGLSGWLPGSRSLMNKIEVSHEARKRAASLPILLCHGISDDVILCKYGEKSVQSLCSAGFRHVVFKSYDGLGHYTVPKEMDEVCTWFNLRLGLEGSS 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00126 260 Pfam Phospholipase/Carboxylesterase 28 250 IPR003140 GO:0016787
Cca10g00126 260 SUPERFAMILY alpha/beta-Hydrolases 29 251 IPR029058 -
Cca10g00126 260 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 14 260 - -
Cca10g00126 260 Gene3D alpha/beta hydrolase 18 254 IPR029058 -
Cca10g00126 260 PANTHER ALPHA/BETA-HYDROLASES SUPERFAMILY PROTEIN 14 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00126 Cca-Chr10 1228690 1232464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00126 16 259 Acyl Lipid Metabolism Gene Families AT3G15650 76.639 5.09e-128 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00126 K06130 - gmx:100798395 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g00177 11 2136806 2140391 Cca10g00126 10 1228690 1232464 ECH
Cca03g00754 03 16124863 16139459 Cca10g00126 10 1228690 1232464 ECH
Cca10g00126 10 1228690 1232464 Cca10g00126 10 1228690 1232464 ECH
Cca10g00126 10 1228690 1232464 Cca11g00177 11 2136806 2140391 PCT