Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca09g02348 ATGAAAAATCGTTTCTTTTTTGGGGGAGCGAAAATGGGCATGTGGAAATGGGGCTTTTTGGGGCTTCTTTGCGCTGATTTTCTCTTTGCAATTGGTGCTGTGGAGCTGGGCAGGAGTCAACCCACTGAAAGAATTTCAGGTAGCGCTGGTGATGTATTGGAAGATGATCCAGTGGGAAGATTGAAGGTTTTTGTTTATGAACTTCCAAGTAAATATAATAAGAAAATTTTGCAGAAAGACCCAAGATGTCTCAACCATATGTTTGCTGCTGAAATCTTTATGCACCGGTTTCTCTTGTCTAGCCCTGTCCGAACCCTTAATCCTGAAGAAGCTGATTGGTTTTATACCCCTGTATACACCACTTGTGACTTGACACCAAATGGCCTCCCTTTACCTTTTAAGTCCCCACGAATGATGAGAAGTGCCATACAGCTTATTTCTTCAAACTGGCCTTATTGGAACCGGACAGAGGGGGCAGATCACTTCTTTGTAGTTCCTCATGACTTTGGGGCATGTTTCCATTACCAGGAAGAGAAGGCAATTGAAAGAGGGATTCTTCAACTGCTTTGGCGTGCTACATTGGTTCAAACATTTGGACAGAGGAATCACGTGTGCTTGAAAGAGGGTTCAATTACCATTCCTCCATATGCTCCACCACAGAAAATGCATACCCACCTAATTCCTGACAAGACTCCCAGGTCCATTTTTGTATACTTCCGAGGACTCTTTTATGATGTTGGCAATGACCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGGGCAGCAGTGTGGGAGAACTTTAAGGACAATCCCCTATTTGACATCTCCACTGAACATCCAACCACATACTACGAGGACATGCAACGGGCTGTGTTTTGTCTATGCCCACTTGGATGGGCCCCTTGGAGCCCAAGATTGGTAGAGGCTGTGATATTTGGCTGTATCCCTGTTATTATTGCAGATGACATTGTTCTGCCATTTGCTGATGCAATCCCATGGGAAGATATAGGTGTGTTTGTTGATGAGGAGGATGTTCCTAAGCTGGATACCATACTCACATCTATTCCACCAGATGTCATATTAAGGAAGCAGAGATTGCTTGCCAACCCTTCCATGAAGCAAGCAATGCTGTTCCCACAACCTGCTCAACCGGGTGACGCGTTCCATCAAGTTTTAAATGGACTCGCACGGAAGTTGCCACATGGCAGCACTGTGTTCTTGAAGCCAGGGGAGAAGATCTTGAACTGGACTGCTGGACCTGTTGGTGACCTTAAACCTTGGTAA 1284 0.4525 MKNRFFFGGAKMGMWKWGFLGLLCADFLFAIGAVELGRSQPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKDPRCLNHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVVPHDFGACFHYQEEKAIERGILQLLWRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHTHLIPDKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKDNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEDIGVFVDEEDVPKLDTILTSIPPDVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHGSTVFLKPGEKILNWTAGPVGDLKPW 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca09g02348 427 Pfam Exostosin family 60 355 IPR040911 -
Cca09g02348 427 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 17 421 IPR004263 GO:0006486|GO:0016757
Cca09g02348 427 PANTHER IRX10L-LIKE PROTEIN, PUTATIVE-RELATED 17 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca09g02348 Cca-Chr9 48765317 48769407 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca09g02348 K20870 - gmx:100812747 839.721
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00269 03 3936377 3941322 Cca09g02348 09 48765317 48769407 ECH
Cca09g02348 09 48765317 48769407 Cca09g02348 09 48765317 48769407 ECH
Cca09g02348 09 48765317 48769407 Cca03g00241 03 3545241 3547933 PCT
Cca03g00269 03 3936377 3941322 Cca09g02348 09 48765317 48769407 PCT