Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00241 ATGAGACCTTCTAACAAATGCTTCTCTTCCTTCACTTATTGGTTTTCTCACTTTGTGGTTCTTTTGTTCATAACTTCACTAGTTTTTGTTTCTTGCCGTAGTCTTCTCTCTCCAAATTTCTCTTCATCTCATTTTTCTTGGAGTTGGAGAGGAAAACCAACTTCCTCTTTGGATACAGAAAAGAAAAGAGCTTCAATATTACATGATGATGAAGCTCCATCTCCTACTGCATTTGCTTCAGATCTTTATGGTTCTCGAGAATTCAACGAGCTTGACACCAAGTTTAAGCATAAAGGGAACCTTAGAGCTCACAAGTACAGCAAGTTGAGAAGAATTGAAGCAACATTGGCTAAAGCAAGGTATTCCATCAGAGAAGCTAGCAAAATTCGAAATTTGACATCAACCTTCCATGATCCAGACTATGTTCCTCGAGGTCCAATTTACAGAAACGCCAATGCCTTCCATAGGAGTTACCTAGAGATGGAAAGGCTGTTCAAGATTTTTGTGTATGAAGAAGGGGAGCCACCGATGTTCCACGATGGTCCAAGCAAAGATATATATGCCAGTGAGGGAAGAATCATACATGAAATGGAAAAGGGGAGGTACTATCGTACCTATGATCCAGATGAAGCTTTTGTGTATTATCTTCCCTTCAGTGTGGTTATGATAGTTGAACATGTGTACGACCGTGGCTCCAATTATAATGTAGATCCGATTGGCCTTGTTGTGAAAGACTACATACATATTGTATCTCATAAACATTCCTTCTGGAATCGATCGATGGGCCATGATCATTTCATGCTCTCTTGCCACGATTGGGGTCCATTAGCATCTAGTTTCGTAGATCGCTTGTTCAACAATGCCATTAGGGTTCTTTGCAATGCAAATACATCTGAAGGATTCAAGCCAGCAAAGGATGTGTCGTTTCCTGAGATGAATCTTAAGACAGGGGAAGTCACAGGCCTAGTTGGAGGGTATCCTACATCTCAAAGGACTATCCTTGCTTTCTTTGCAGGTCACTTGCATGGCTATATAAGATACCTACTCTTAGATAGTTGGAAAAACAAAGACCAAGATGTGCAAGTCTATGAGGAACTTCCTCAGGGAATCTCTTACCACACCAAGCTTAGAAGCAGCAAGTTCTGCCTATGTCCAAGTGGTTATGAAGTAGCTAGTCCCAGAATAGTGGAAGCAATATTTGCAGAATGTGTACCAGTACTGATATCTGATAACTATGTTCCACCCTTTAGTGATGTTTTGAATTGGAGTTCATTTTCAGTTCAAGTGGATGTGAAGGACATTCCCAACATCAAAAAGATACTCATGGGCATTTCAGAAAGGCAGTACTTGAAGATGCAAAGGAGAGTGAAACAAGTGCAAAGGCATTTTGTGCCTAATGAACCCCCAAAGAGGTATGATATGTTCCATATGACTATCCATTCTATTTGGCTCAGGAGGTTGAATATCCATATTCGAGATCAGTAA 1485 0.4047 MRPSNKCFSSFTYWFSHFVVLLFITSLVFVSCRSLLSPNFSSSHFSWSWRGKPTSSLDTEKKRASILHDDEAPSPTAFASDLYGSREFNELDTKFKHKGNLRAHKYSKLRRIEATLAKARYSIREASKIRNLTSTFHDPDYVPRGPIYRNANAFHRSYLEMERLFKIFVYEEGEPPMFHDGPSKDIYASEGRIIHEMEKGRYYRTYDPDEAFVYYLPFSVVMIVEHVYDRGSNYNVDPIGLVVKDYIHIVSHKHSFWNRSMGHDHFMLSCHDWGPLASSFVDRLFNNAIRVLCNANTSEGFKPAKDVSFPEMNLKTGEVTGLVGGYPTSQRTILAFFAGHLHGYIRYLLLDSWKNKDQDVQVYEELPQGISYHTKLRSSKFCLCPSGYEVASPRIVEAIFAECVPVLISDNYVPPFSDVLNWSSFSVQVDVKDIPNIKKILMGISERQYLKMQRRVKQVQRHFVPNEPPKRYDMFHMTIHSIWLRRLNIHIRDQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00241 494 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 94 491 IPR004263 GO:0006486|GO:0016757
Cca03g00241 494 Pfam Exostosin family 163 442 IPR040911 -
Cca03g00241 494 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 32 - -
Cca03g00241 494 PANTHER OS07G0188700 PROTEIN 94 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00241 Cca-Chr3 3545241 3547933 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00241 - - gmx:112997610 795.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02348 09 48765317 48769407 Cca03g00241 03 3545241 3547933 PCT