Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00269 ATGGATTTTTGGAAGGTGGGTTTCCTTGGCCTTCTTTGTGCTGCTTCTGTTTTTGCAACTGGGGCTGTGGAGTTGGGTCGGCATCAACCTACTGAGAGAATTTCAGGTAGTGCTGGTGATGTGTTAGAAGATGATCCAGTGGGAAGGTTGAAGGTTTTTGTTTATGAACTTCCAAGCAAATATAATAAGAAAATTCTGCAAAAGGATCCTAGATGCCTAACTCATATGTTTGCTGCTGAGATCTTTATGCACCGGTTTCTCTTATCTAGCCCTGTCCGAACCCTTAATCCTGAAGAAGCTGATTGGTTTTATACCCCTGTATACACCACCTGTGACTTGACACCGAATGGCCTTCCTTTACCTTTCAAGTCACCGCGAATGATGAGAAGTGCCATACAGCTAATTTCTTCAAACTGGCCTTATTGGAACAGAACTGAAGGGGCAGATCATTTCTTTGTGACCCCTCATGACTTTGGGGCATGTTTCCATTATCAAGAAGAGAAAGCGATTGAAAGAGGAATTCTTCCATTGCTACAGCGTGCTACCTTGGTTCAAACATTTGGACAGAGGAATCATGTGTGCTTGAAAGAAGGCTCAATCACCATTCCTCCGTATGCTCCACCACAGAAAATGCATGCACACCTAATCCCTGATAAGACTCCCAGATCCATTTTTGTTTACTTCCGAGGACTGTTTTATGATGTTGGAAATGACCCTGAAGGTGGTTACTATGCAAGAGGTGCAAGAGCAGCAGTGTGGGAGAACTTCAAGAACAATCCACTGTTTGACATTTCCACTGAGCATCCAACGACATATTACGAGGACATGCAACGAGCTGTGTTCTGCTTGTGTCCACTTGGGTGGGCTCCTTGGAGCCCGAGACTGGTTGAGGCTGTGATATTTGGCTGCATCCCAGTTATCATTGCAGATGATATTGTTCTGCCATTTGCTGATGCAATCCCATGGGAAGAGATAGGTGTATTTGTTGATGAGAAAGATGTCCCTCAGTTAGATACAATACTCACATCTATTCCACCAGAAGTCATCTTAAGGAAGCAGAGATTGCTTGCTAACCCTTCCATGAAGCAAGCCATGCTGTTCCCGCAACCGGCACAGCCGGGAGATGCTTTCCATCAAGTTCTAAATGGCCTCGCGCGTAAATTGCCGCATGAAAAGAGCGTATTCTTGAAAGCAGGGGAGAAGGTTTTGAATTGGACTGCTGGCCCTGTGGGGGACCTTAAACCATGGTAG 1251 0.4532 MDFWKVGFLGLLCAASVFATGAVELGRHQPTERISGSAGDVLEDDPVGRLKVFVYELPSKYNKKILQKDPRCLTHMFAAEIFMHRFLLSSPVRTLNPEEADWFYTPVYTTCDLTPNGLPLPFKSPRMMRSAIQLISSNWPYWNRTEGADHFFVTPHDFGACFHYQEEKAIERGILPLLQRATLVQTFGQRNHVCLKEGSITIPPYAPPQKMHAHLIPDKTPRSIFVYFRGLFYDVGNDPEGGYYARGARAAVWENFKNNPLFDISTEHPTTYYEDMQRAVFCLCPLGWAPWSPRLVEAVIFGCIPVIIADDIVLPFADAIPWEEIGVFVDEKDVPQLDTILTSIPPEVILRKQRLLANPSMKQAMLFPQPAQPGDAFHQVLNGLARKLPHEKSVFLKAGEKVLNWTAGPVGDLKPW 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00269 416 Pfam Exostosin family 49 344 IPR040911 -
Cca03g00269 416 PANTHER EXOSTOSIN HEPARAN SULFATE GLYCOSYLTRANSFERASE -RELATED 6 410 IPR004263 GO:0006486|GO:0016757
Cca03g00269 416 PANTHER IRX10L-LIKE PROTEIN, PUTATIVE-RELATED 6 410 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00269 Cca-Chr3 3936377 3941322 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00269 K20870 - gmx:100800085 848.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00269 03 3936377 3941322 Cca09g02348 09 48765317 48769407 ECH
Cca03g00269 03 3936377 3941322 Cca03g00269 03 3936377 3941322 ECH
Cca03g00269 03 3936377 3941322 Cca09g02348 09 48765317 48769407 PCT