Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01880 ATGACTGAGGCAAAACTAAGGTATGGTGTTGTTAGTGGGGCAAACAAAGGAATAGGGTTTGAGACTGTTAAAGAGTTGGCCTCAAATGGAGTGAAGGTGAACAATGCAGGAATAAGTGGTGTTAATCCCTATGAAAGGGAAGGATCAACAATTAACTGGAAAGAACTGACTCAAACTTATGAGATGGCAGAAAAGTGTCTAACAACAAACTATTATGGTGCAAAGGAAACAACTGAAGCATTTCTTCCCCTTCTGCAATTATCCAACTCACCAAGTATTGTTAATGTTTCCTCCCAAGCAGGGTCATTAAAGAGGATAGCAAACAAATTGGCTAAAGGGGTGTTTGATGATGCTGAGAATCTTACAGAAGAGAGAATAGATAAGGTAGTGAAAGAGTTCATGAAGGACTTCAAAGAAGGTTCACTTGAAAACAAAGGGTGGCCAACCTACTTGTCTGCCTACATGGTCTCAAAAGCAGCCATGAATTGTTACACAAGGATTGTTGCCAAGAAGCATCCAAACTTTTGCATTAATTGTGTGTGTCCTGGTTTTGTCAAAACAGACATAAATGGAAACACTGGCATCTTATCTATTGACCAAGGTGCTGCTAGTGTTGTCAGATTAGCACTTCTGCCTAATGGTTCCCCTTCTGGCTTCTTTTATAGTAGGCAAGAATTTTTTTTTCCAATGCTTTCTACTGTTTTATGGGGATACAATATACTTTCACACTACTGTCCCACATACAAATATTTGTCCTTTTGCTGTGTAATGAATGTTTGCATAATTTGTAGAACTGTGCCTGTGGTTTGTGAATTCAGGTATGGTGTTGTTACTGGGGCAAACAAAGGGATAGGATTTGAGACTGTTAAAGAGTTGGCCTCAAATGGAGTGAAGGTGGTGCTCACAGCCAGAGATGAGAAAAGAGGACTTGAAGCCATTGAGAGATTGAAAGAGAGTGGTCTCTCTGATTTGGTGATTTTTCACCAGCTTGATGTCACTGATTCTGCTAGTATCGCTTCATTAGTAGACTTTGTTAAGAACCAGTTTGGGAAACTTGATATCTTGGTAAGACGTGCTGATATGATATTTGAATATTCTGAACTGTGGAATTCAGGATCAACGATTAACTGGAAGGAACTGGGTCAAACTTGTGAGATGGCTGAAAAGTGCCTAACAACAAACTACTATGGAGCAAAGAAAACAACTGAAGCATTTCTTCCCCTTCTGCAGTTATCCAATTCACCTAGGATTGTTAATGTTTCCTCCCAATCAGGGTTGTTAAAGAACATAGCAAACGAATGGGCTAAAGGGGTGCTTGATGATGCTGAGAATCTTACAGAAGAGAGAATAGATGAGGTACTGAAAGAGTTCATCAAAGACTTCAAAGAAGGTTCATTAGAAAACAAAGGGTGGCCAACCTTTGTGTCTGCCTATGTGGTTTCAAAAGCAGCCATGAATTCTTACACAAGGATTATAGCCAAGAAGCAACCAAACATGTGCATTAATAGTGTTTGTCCTGGTTTTGTCAAAACAGACATAAACAGAAACACTGGCATCTTATCCGTTGACCAAG 1573 0.3967 MTEAKLRYGVVSGANKGIGFETVKELASNGVKVNNAGISGVNPYEREGSTINWKELTQTYEMAEKCLTTNYYGAKETTEAFLPLLQLSNSPSIVNVSSQAGSLKRIANKLAKGVFDDAENLTEERIDKVVKEFMKDFKEGSLENKGWPTYLSAYMVSKAAMNCYTRIVAKKHPNFCINCVCPGFVKTDINGNTGILSIDQGAASVVRLALLPNGSPSGFFYSRQEFFFPMLSTVLWGYNILSHYCPTYKYLSFCCVMNVCIICRTVPVVCEFRYGVVTGANKGIGFETVKELASNGVKVVLTARDEKRGLEAIERLKESGLSDLVIFHQLDVTDSASIASLVDFVKNQFGKLDILVRRADMIFEYSELWNSGSTINWKELGQTCEMAEKCLTTNYYGAKKTTEAFLPLLQLSNSPRIVNVSSQSGLLKNIANEWAKGVLDDAENLTEERIDEVLKEFIKDFKEGSLENKGWPTFVSAYVVSKAAMNSYTRIIAKKQPNMCINSVCPGFVKTDINRNTGILSVDQ 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01880 524 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 270 523 - -
Cca07g01880 524 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 32 226 - -
Cca07g01880 524 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 4 33 - -
Cca07g01880 524 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 270 523 - -
Cca07g01880 524 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 32 226 - -
Cca07g01880 524 PRINTS Glucose/ribitol dehydrogenase family signature 274 291 IPR002347 -
Cca07g01880 524 PRINTS Glucose/ribitol dehydrogenase family signature 478 497 IPR002347 -
Cca07g01880 524 PRINTS Glucose/ribitol dehydrogenase family signature 350 361 IPR002347 -
Cca07g01880 524 PRINTS Glucose/ribitol dehydrogenase family signature 409 425 IPR002347 -
Cca07g01880 524 PRINTS Glucose/ribitol dehydrogenase family signature 497 514 IPR002347 -
Cca07g01880 524 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 10 215 IPR036291 -
Cca07g01880 524 Gene3D - 31 227 - -
Cca07g01880 524 Gene3D - 272 524 - -
Cca07g01880 524 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 4 33 - -
Cca07g01880 524 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 276 522 IPR036291 -
Cca07g01880 524 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 465 493 IPR020904 GO:0016491
Cca07g01880 524 Pfam short chain dehydrogenase 276 429 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01880 Cca-Chr7 45805316 45818197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01880 276 513 Miscellaneous Gene Families AT2G29150 27.386 1.17e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01880 K15095 - qsu:111996010 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01880 07 45805316 45818197 Cca07g01880 07 45805316 45818197 ECH
Cca07g01880 07 45805316 45818197 Cca01g02221 01 50379421 50381925 PCT
Cca01g02220 01 50351684 50361033 Cca07g01880 07 45805316 45818197 PCT