Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02221 ATGGGTATGGCAGATGCAAAAGAAAGATATGCTGTTGTGACAGGTGCAAACAAAGGGATAGGATTGGAGACTGTGAAAGGGTTGGCCTCAAAAGGAATCAAGGTGGTGCTCACGGCCAGGGATGAGAAGAGGGGTTATCAAGCTGTTGAGGAATTGAAGAAAAAGTGTGGTTTCTCTGGCCTTGTGGTGTTTCATCAGCTTGATGTCACTGACCCTGCTAGTATTGCTTCTTTGGTTGAGTTTGTTAGGACCAAGTTTGGGAGACTTGATATATTGGTGAACAATGCAGGAATTAGTGGATTCAACACAGATGGCATGGTGCCATCTAAAATTAACTGGAAGGAGCTGCCTCAAACTTATGAAATGGCTGAAAAATGCCTAACAACAAACTATTATGGTGCTATGGAAACAACTGAGGCATTTCTTCCACTTCTTCAATTATCCAATTTTCCCATGATTGTAAATGTTTCTTCAGAAGCTGGGCTATTAAAGTACATATCAAATGAATGGGCAAGGAGGGTGCTTGATGACACTGAAAACCTTACAGAAGAGCTGATAGATGATGTGCTGAAGGAGTATATGAAAGATTTGAAAGATGGTTCCATTGAAAAAAAGGGGTGGCCAACCTACCTTTCTGCCTATATGGTCTCAAAAGCAGCCATCAATTCTTACACAAGACTTCTGGCATATAGGCACCCAAACTTGTGCATAAATTGTGTGTGTCCTGGTTTTGTTAAAACAGACATTAACCGAAACACGGGCATCTTATCTGTTGAAAATGGTGCTGCTAGTGTTGTCAGATTAGCATTGTTGCCTAATGGTTCCCCTTCTGGTCACTTCTTTACTAGGCAACAGGTGTCAAGCTTTTGa 870 0.4161 MGMADAKERYAVVTGANKGIGLETVKGLASKGIKVVLTARDEKRGYQAVEELKKKCGFSGLVVFHQLDVTDPASIASLVEFVRTKFGRLDILVNNAGISGFNTDGMVPSKINWKELPQTYEMAEKCLTTNYYGAMETTEAFLPLLQLSNFPMIVNVSSEAGLLKYISNEWARRVLDDTENLTEELIDDVLKEYMKDLKDGSIEKKGWPTYLSAYMVSKAAINSYTRLLAYRHPNLCINCVCPGFVKTDINRNTGILSVENGAASVVRLALLPNGSPSGHFFTRQQVSSF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02221 289 Gene3D - 3 289 - -
Cca01g02221 289 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 2 289 - -
Cca01g02221 289 Pfam short chain dehydrogenase 10 166 IPR002347 -
Cca01g02221 289 CDD carb_red_PTCR-like_SDR_c 9 289 IPR045313 GO:0016616
Cca01g02221 289 PRINTS Glucose/ribitol dehydrogenase family signature 10 27 IPR002347 -
Cca01g02221 289 PRINTS Glucose/ribitol dehydrogenase family signature 87 98 IPR002347 -
Cca01g02221 289 PRINTS Glucose/ribitol dehydrogenase family signature 145 161 IPR002347 -
Cca01g02221 289 PRINTS Glucose/ribitol dehydrogenase family signature 214 233 IPR002347 -
Cca01g02221 289 PRINTS Glucose/ribitol dehydrogenase family signature 233 250 IPR002347 -
Cca01g02221 289 Pfam Enoyl-(Acyl carrier protein) reductase 204 253 - -
Cca01g02221 289 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 289 - -
Cca01g02221 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 87 98 IPR002347 -
Cca01g02221 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 151 159 IPR002347 -
Cca01g02221 289 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 214 233 IPR002347 -
Cca01g02221 289 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 9 275 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02221 Cca-Chr1 50379421 50381925 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02221 11 249 Miscellaneous Gene Families AT2G29150 28.512 2.03e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02221 K15095 - gmx:111064653 533.872
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02221 01 50379421 50381925 Cca01g02221 01 50379421 50381925 ECH
Cca07g01880 07 45805316 45818197 Cca01g02221 01 50379421 50381925 PCT