Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g02220 ATGGGAGAAGATGGTGAAAGGTATGCAGTTGTGACAGGTGCAAATAAAGGAATTGGATTGGAGATAGTTAGGCAATTAGCTTCAGCTGGAATCAAGGTGGTTCTGACAGCAAGAAATGAGGAAAGGGGTCTCCAAGCACTGCAGACACTCCAAGCCTCTGGTCTTTCTCACCTTGTTCTCTTTCATCAACTGGATGTGGCTGATGCTACAAGTGCAGCTTCTCTTGCTCATTTCATCAAATCTAAATTTGGAAAACTTGATATTCTGGTTAACAATGCAGGGATTAGTGGAACTGGAATTAAAAACACTGATTTATTCCAAGGAGTCCTGCAGAATCGTTTGGCGAATTTGGTTAACAATGCAAGGATTAGTGGAACTGAAATTAAAAACACTGATTTACTCCGAGGAGTCCAGCAGAATCGTTTGGCGAATTTGGGAGTATCAAAAGATGATAGGGAAAGGGCAATAACCCAAACATATGAGTTAGCTGAAGAATGCTTGAAAATAAATTACTATGGGGCTAAAATAGTAGTAGAATCCCTTATGCCCCTACTCCAGTTATCCGATTCACCAAGAATTGTGAATGTATCATCCACTTTGGGGATATTAGAGAATTTCCCAAAAGGATCATGGGCTAAAAGAGTGTTGAGTGATGTTGATAATCTTAGTGAAGAGAAAGTGGATGAAATATTGAACAAGTTTCTAAGATATTTCCAAGAAGGTTCATTAGAAAGTAATGGATGGCCTACGTCTGCCTATAGTGTCTCGAAAGCTGCAATGAATGGCTATACTAGAATCCTTGCTAAGAAATATCCTTCATTTTGCATCAATAGTGTTTGCCCTGGTTATGTCAAAACAGATATAACTGCAAACACTGGCATCTTAACAGTTGAAGAAGGTGCTGCTAGTCCTGTGAGGCTAGCATTGCTTCCTAATGGTAGTCCATCTGGCCTCTTCTATTACCGGACTGACGTGGCTTCCTTTTGA 987 0.4022 MGEDGERYAVVTGANKGIGLEIVRQLASAGIKVVLTARNEERGLQALQTLQASGLSHLVLFHQLDVADATSAASLAHFIKSKFGKLDILVNNAGISGTGIKNTDLFQGVLQNRLANLVNNARISGTEIKNTDLLRGVQQNRLANLGVSKDDRERAITQTYELAEECLKINYYGAKIVVESLMPLLQLSDSPRIVNVSSTLGILENFPKGSWAKRVLSDVDNLSEEKVDEILNKFLRYFQEGSLESNGWPTSAYSVSKAAMNGYTRILAKKYPSFCINSVCPGYVKTDITANTGILTVEEGAASPVRLALLPNGSPSGLFYYRTDVASF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g02220 328 Pfam short chain dehydrogenase 250 291 IPR002347 -
Cca01g02220 328 Pfam short chain dehydrogenase 8 99 IPR002347 -
Cca01g02220 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Cca01g02220 328 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 253 272 IPR002347 -
Cca01g02220 328 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 113 328 - -
Cca01g02220 328 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 114 - -
Cca01g02220 328 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Cca01g02220 328 PRINTS Glucose/ribitol dehydrogenase family signature 185 201 IPR002347 -
Cca01g02220 328 PRINTS Glucose/ribitol dehydrogenase family signature 253 272 IPR002347 -
Cca01g02220 328 PRINTS Glucose/ribitol dehydrogenase family signature 272 289 IPR002347 -
Cca01g02220 328 CDD carb_red_PTCR-like_SDR_c 7 325 IPR045313 GO:0016616
Cca01g02220 328 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 314 IPR036291 -
Cca01g02220 328 Gene3D - 5 328 - -
Cca01g02220 328 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 113 328 - -
Cca01g02220 328 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 7 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g02220 Cca-Chr1 50351684 50361033 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca01g02220 6 238 Acyl Lipid Metabolism Gene Families AT1G63380 27.273 7.26e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g02220 K15095 - gmx:102663482 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca01g02220 01 50351684 50361033 Cca01g02220 01 50351684 50361033 ECH
Cca01g02220 01 50351684 50361033 Cca07g01880 07 45805316 45818197 PCT