Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01675 ATGGCAGTGCTAGctcttcctcttcctccaccactaaccatgttcacccaattcctcatcttcctcctcctcttcatttccACCACAGCTCAAGACACCTTCGTGCGCACACTAGACCGCAAAATGTTGGGTTTAGATGAAAAACAAGAAAAGCTGAGTCATTTCAGATTCTATTGGCATGACGTGTTAAGTGGACAAAAGCCTTCTTCGATGGAAGTGGTTTCACCAGCCTTGAAGAACTCAAGCACAGGCTTTGGATTGGTGAACATGATTGAGAACCCTTTGACGTTGGAACCCCAATTGAACTCAAAATTGGTGGGGAAGGCACAGGGGTTCTATGCTTCGACATCACAGAGTGAGGTTACGTTGCTCATGGCTATGAATTTTGCAATCACTGAAGGAAAGTACAATGGGAGCACCATAACCATTTTGGGGAGGAACCCCATTTTCAACAAGGAGAGAGAGATGCCCGTGATTGGTGGAAGTGGTCTTTTTCGATTTGCTAGGGGCTATGCCAAACTTAGGACTCATTGGTTCTCACCCACCACTAGGGATGCTATTGTTGAGTACAATGTTTATGTTTTGCATTATTGA 594 0.3956 MAVLALPLPPPLTMFTQFLIFLLLFISTTAQDTFVRTLDRKMLGLDEKQEKLSHFRFYWHDVLSGQKPSSMEVVSPALKNSSTGFGLVNMIENPLTLEPQLNSKLVGKAQGFYASTSQSEVTLLMAMNFAITEGKYNGSTITILGRNPIFNKEREMPVIGGSGLFRFARGYAKLRTHWFSPTTRDAIVEYNVYVLHY 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01675 197 PANTHER NUCLEOPORIN-RELATED 14 196 IPR004265 -
Cca07g01675 197 Gene3D - 41 191 IPR044859 -
Cca07g01675 197 PANTHER DIRIGENT PROTEIN 14 196 - -
Cca07g01675 197 Pfam Dirigent-like protein 53 194 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01675 Cca-Chr7 42255248 42256738 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01675 - - gmx:100796078 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01675 07 42255248 42256738 Cca01g01966 01 45923096 45924268 PCT
Cca01g01967 01 45930495 45931460 Cca07g01675 07 42255248 42256738 PCT