Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01966 ATGGCAAGCCGTTTTGTGGTTCTCGCCCTTCTCATCTCCTGCCACGCCCTGGCTTCCACCAACGCCGAAGAAACAGGCTTCGTGGGCCCACTGGACCGCAAAACATTGGGCCTAAAAAGGAAAGAAAAGTTGAGCCATTTCCGCTTCTACTTCCACGAAAGCTTCACCCCAAACAACGCCACCACCGTCACGGTGGTGCAGCCCCTCCCCAAGTACAACGCCACCACCTCCTTCGGGTCGGTCGGGGTCACCGACAACGCCTTGACCGTAGGACCCGAGCGCACCTCCAAGGTGGTGGGAAGAGTGGAAGGCGTTGTGGCCGCCACCTCACAATCGGAGTTCAATCTGTTGGTGGTTCTGAACTTTGTCTTAACCGAAGGGAGGTACAATGGAAGCAGCATCGTGGTGTTGGGGAGGAACCGTCTCTCCCTCAAGGTTAGGGAGTTGCCGGTGATCGGAGGTACTGGGGTGTTTAGATTTGCCACTGGGTATGCTGAAACTAACACCATCTTTCTTGATCCCAAGACCAGGTCTACCGTTGAGTACAACGTTTATGTTTCTCATTACTGA 570 0.5456 MASRFVVLALLISCHALASTNAEETGFVGPLDRKTLGLKRKEKLSHFRFYFHESFTPNNATTVTVVQPLPKYNATTSFGSVGVTDNALTVGPERTSKVVGRVEGVVAATSQSEFNLLVVLNFVLTEGRYNGSSIVVLGRNRLSLKVRELPVIGGTGVFRFATGYAETNTIFLDPKTRSTVEYNVYVSHY 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01966 189 Pfam Dirigent-like protein 45 186 IPR004265 -
Cca01g01966 189 PANTHER DIRIGENT PROTEIN 7 6 188 - -
Cca01g01966 189 Gene3D - 29 186 IPR044859 -
Cca01g01966 189 PANTHER NUCLEOPORIN-RELATED 6 188 IPR004265 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01966 Cca-Chr1 45923096 45924268 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01966 - - gmx:100806935 289.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01675 07 42255248 42256738 Cca01g01966 01 45923096 45924268 PCT