Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01803 ATGAGAGGTGATGCTTTCGACACTATCAACGCTGCTGCCACTGCGATTGCTTCCGTCCAAAATCGCCTCCATCCTCACGTCCAGAAGAAAAGCTGGGGAAGCTGGTTGAGCACATATTGGTGTTTTGGACACCACAAAAACCGAAAGCGCATTGGACATGCAGTCCATGTTCCCGATAGTTCAACAACACAAGCACCTAGTATTCCACTCCCCTTCGCTGCACCTCCCTCTTCTCCCGCATCTTTCCTTCACCCAGAACCTTCTTCAGTTGCACAATCACCAGGTGGCATACTACCTCTCACTTCCGTTTCTGCCAGCATGTACTCTCCTAGTCCTAGTGGTCCTTTCTCTATCTTTGCCATTGGACCATACACACATGAAACACAACTAGTGTCACCGCCAGTTTTCTCAACATTCACCACTGAGCCATCAACCGCTCCATTCACTCCACCTCCTGAATCTGTCCACTTGACTACACCTTCTTCACCTGAAGTGCCATTTGCTCAGCTTCTTGACCCCAAAAACAGGAATGGTGAGACATATCACTATCACTATGACTTCCACTCTTATCAGCTTCATCCTGGAAGCCCCATTGGTCAACTCATATCACCAAGATCAGCTTTCTCAGCTTCTGGCACCTCATCTCCTTTCCCTGACACCGAGTTCACTTCTCGTGCTTCCTTCCTCCTTGACCCTCCCAAGCTTCTAAACTTGGATAAACTCTCAACTTATGAAAACCAAAAGTCACGTCAAGGTTCTTCTGGCTCTCTAACCCCAGATTCTGTAAGATCCACAACTCAACCTGGTTTTCTCCAAAGCCACTGGGTTTCTGAGATCACAATGTCCCCACATCCAAGAAAGAATCGCCCCAATGAGATTAGTGTAAATCATAGGGTCTCAATTGAAGTATCTGCACAAGAAGCATTGAGATGTGTGGAAAACAAGCCAGTGGCATGTACTATAGCACCTTCAAAGTTCAAAACTGATGCACCCGGAGCAGATAAAGAAGATAATTCAGGAGAAGCCCTTGTAACTGAAACTCCCAATGATGCACCACAGCAGATCACGGACGGTGGAGATGGGGAAATAGTTCACCAAAAGGAAGATTGTATAACATTTTCATCTGCTAAAGAATTCAACTTTGATAACGCTGAAGGAGGGGATTCTCCTGCTCCCAATATAGTTGCTGAGTGGTGGGCTAATGAGAAAGTTGCAAGTAAGGAAGGAGGATCCTCCAACAATTGGTCTTTCTTCCCAATGATTCAACCTGGTGCTGGATAA 1281 0.4629 MRGDAFDTINAAATAIASVQNRLHPHVQKKSWGSWLSTYWCFGHHKNRKRIGHAVHVPDSSTTQAPSIPLPFAAPPSSPASFLHPEPSSVAQSPGGILPLTSVSASMYSPSPSGPFSIFAIGPYTHETQLVSPPVFSTFTTEPSTAPFTPPPESVHLTTPSSPEVPFAQLLDPKNRNGETYHYHYDFHSYQLHPGSPIGQLISPRSAFSASGTSSPFPDTEFTSRASFLLDPPKLLNLDKLSTYENQKSRQGSSGSLTPDSVRSTTQPGFLQSHWVSEITMSPHPRKNRPNEISVNHRVSIEVSAQEALRCVENKPVACTIAPSKFKTDAPGADKEDNSGEALVTETPNDAPQQITDGGDGEIVHQKEDCITFSSAKEFNFDNAEGGDSPAPNIVAEWWANEKVASKEGGSSNNWSFFPMIQPGAG 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01803 426 MobiDBLite consensus disorder prediction 328 361 - -
Cca06g01803 426 MobiDBLite consensus disorder prediction 141 161 - -
Cca06g01803 426 MobiDBLite consensus disorder prediction 243 267 - -
Cca06g01803 426 MobiDBLite consensus disorder prediction 405 426 - -
Cca06g01803 426 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 3 424 IPR040420 -
Cca06g01803 426 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 3 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01803 Cca-Chr6 33417301 33420048 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01803 - - gmx:100777876 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01803 06 33417301 33420048 Cca06g01803 06 33417301 33420048 ECH
Cca02g02229 02 42818558 42822286 Cca06g01803 06 33417301 33420048 ECH
Cca06g01803 06 33417301 33420048 Cca09g02444 09 49829153 49831487 PCT