Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02229 ATGAAAGAGAGAGTTGGATGTTCCATTCCATGGCATTGGCATCATTACATTACTTCTTATTTCTCCAAAACCCCTTCGCCGGAACTTCCATTTCCCATGGGAACCCTTATCAACACCGTCGACACCGTCAATGCCGCCGCCTCCGCCATCGTCAACGCCGAATCCAGAATCCAACCCACCACCACCGTGCCGAAAAAACGTTGGGGAAGCTGCTGGAGCTTATATTGGTGTTTTGGACCTCATAAAAACAGCAAGAGAATTAGCAACGCTGTCCTTGTTCCTGAACCTGTTGAGCCAATAGTCCCAGTTGGATCTCATCCTGCTACTGTTGCACCAAATCCTTCAACTGCCATTGTAATGCCATTCATTGTCCCTCCCTCTTCACCTGCATCTTTTCTCCAGTCTGATCCTCCATCTGCTACACAATCACCTGTTGGATTATTCTCTCTCAGTTCTCTCACCGTCAGTGCTTCTGGTGGACCTTCATCCATTTTTGCCATAGGCCCTTATGCCTATGAGACCCAGTTAGTCTCACCACCTGTATTTTCTAACTTCACAACTGAACCATCTACTCCTTTCACTCCACCTCCTGAATCTTTGCAGCTGACTACACCTTCATCCCCTGAGGTGCCATTTGCTCAATTGTTGGCATCTTCTCTAGACCGGGATTGTAAAAATAACGGTACAAATCAGAAGTTTCCATTATCCAATTACGAGTTTCAGCTATACCAACAGTATCCAGGAAGTCCTGGCACTCAACTCATATCACCTGGATCAATCATTTCCACTTCTGGCAGTTCTACTCCTTTCCCTGACAGACACCCAGTTCTTGAATTCCACAAAGGGGAAGCATCAAAGCTCTTGGGATTTGAACACTTCTTGACACGTAAATGGAATTCAAGGCTTGGATCTGGATCTTTGACACCAGACAGTGCAGGTCAAGGTTCAAGACTTGGCTCAGGATCTTTGACACCTGATGCTAATAAGTTAGCTTCGCAACCAGGCTCTGGGTGTTTGACACCTGATGGTTTGTGTCAAGACTCAAGGTTGGGTTCTGGGTCTTTGACACCAGATGGTATGGCGCCACCTGCTAGAAATGACATCTATGTTGGAAAACAGATATCTGTTGCGAATTCAGAGAATGAATGTCAACCAAATGCAGCATTAGTCAATCACAGAGTTTCATTCGAATTAACTGGGGAGGATGTTGCACGATGTCTTGCAAATAAATCAGGGTCTTCATTGCATGGAAACATGTCAGGGTCTTCTCAGGGTACACTGGCTGAAGACCCTGTTGACAGAGAATGGATACAAAAGAACTGCAGTAGTTGTTGCGATTTGTGTTCAAGGAAAAATTCAAATGATAAGCCTAGCAATTCTCCTGGAGAAGGAGAGGAGCAGTGCTGTCGAAGGCATCACTCTTTTAATTCTTCCAAAGAATTTAACTTTGACAACAGAAAAGGTGTTGTTTCTGATAATCCTACCAATAGCTCCGAATGGTGGACTAACAAGAAGATTGTTGGTAAGGAAGGTAGATCAAGCAACAGTTGGGCTTTCTTCCCAATGCTACAGTCAGAAATCATTTAA 1587 0.4468 MKERVGCSIPWHWHHYITSYFSKTPSPELPFPMGTLINTVDTVNAAASAIVNAESRIQPTTTVPKKRWGSCWSLYWCFGPHKNSKRISNAVLVPEPVEPIVPVGSHPATVAPNPSTAIVMPFIVPPSSPASFLQSDPPSATQSPVGLFSLSSLTVSASGGPSSIFAIGPYAYETQLVSPPVFSNFTTEPSTPFTPPPESLQLTTPSSPEVPFAQLLASSLDRDCKNNGTNQKFPLSNYEFQLYQQYPGSPGTQLISPGSIISTSGSSTPFPDRHPVLEFHKGEASKLLGFEHFLTRKWNSRLGSGSLTPDSAGQGSRLGSGSLTPDANKLASQPGSGCLTPDGLCQDSRLGSGSLTPDGMAPPARNDIYVGKQISVANSENECQPNAALVNHRVSFELTGEDVARCLANKSGSSLHGNMSGSSQGTLAEDPVDREWIQKNCSSCCDLCSRKNSNDKPSNSPGEGEEQCCRRHHSFNSSKEFNFDNRKGVVSDNPTNSSEWWTNKKIVGKEGRSSNSWAFFPMLQSEII 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02229 528 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 33 527 - -
Cca02g02229 528 MobiDBLite consensus disorder prediction 304 335 - -
Cca02g02229 528 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN-LIKE 33 527 IPR040420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02229 Cca-Chr2 42818558 42822286 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02229 - - ccaj:109793217 1068.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02229 02 42818558 42822286 Cca06g01803 06 33417301 33420048 ECH
Cca02g02229 02 42818558 42822286 Cca02g02229 02 42818558 42822286 ECH
Cca08g00699 08 13086907 13091233 Cca02g02229 02 42818558 42822286 PCT