Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01790 ATGGCAAATGCAGCGTCCGGAATGGCTGTGCATGATGACTGCAAACTTAAGTTCCAAGAGCTTAAGGCAAAGCGGATCTACCGATTCATTACCTTCAAAATTGAGCAACAACAAGTTGTGGTCGACAAAATAGGGGGATCAACTGAAAGCTATGACGATTTTCAGGCCAGTTTGCCAGGTGACGAGTGTCGTTATGCCGTCTACGATTTTGATTTCACGACTGATGAGAATTGCCAGAAAAGCAAGATCTTCTTCATTGCATGGTCACCAGACACTTCAAAGGTGAGGATGAAGATGGTGTATGCAAGTTCTAAGGATAGATTCAAGAGGGAACTGGATGGCATTCAAGTTGAACTGCAAGCAACTGATCCAAGTGAGATGAGCTTGGACATTGTGAAAGCGCGAGCCTTCTAA 414 0.4444 MANAASGMAVHDDCKLKFQELKAKRIYRFITFKIEQQQVVVDKIGGSTESYDDFQASLPGDECRYAVYDFDFTTDENCQKSKIFFIAWSPDTSKVRMKMVYASSKDRFKRELDGIQVELQATDPSEMSLDIVKARAF 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01790 137 Gene3D Severin 1 136 IPR029006 -
Cca06g01790 137 Pfam Cofilin/tropomyosin-type actin-binding protein 14 134 IPR002108 GO:0003779
Cca06g01790 137 PANTHER COFILIN-RELATED 2 137 IPR017904 GO:0015629|GO:0030042
Cca06g01790 137 ProSiteProfiles ADF-H domain profile. 5 137 IPR002108 GO:0003779
Cca06g01790 137 CDD ADF_cofilin_like 6 136 IPR017904 GO:0015629|GO:0030042
Cca06g01790 137 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 2 137 - -
Cca06g01790 137 SUPERFAMILY Actin depolymerizing proteins 3 135 - -
Cca06g01790 137 SMART adf_2 12 137 IPR002108 GO:0003779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01790 Cca-Chr6 33256750 33258005 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01790 K05765 - gmx:100785437 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02258 02 43138344 43139979 Cca06g01790 06 33256750 33258005 ECH
Cca06g01790 06 33256750 33258005 Cca06g01790 06 33256750 33258005 ECH
Cca06g01790 06 33256750 33258005 Cca09g02417 09 49542605 49544764 PCT