Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02258 ATGGCGAACGCGGCATCTGGAATGGCTGTTACTGATCAGTGTAAATTAAAGTTCCAAGAGCTGAAGGCAAAGAGGAACTACCGTTTCATTGTGTTTAAGATTGAGAACTTTGAAGTGGTAGTGGAGAAGCTTGGAAGCCCAGAAGAAACCTATGAGGACTTCAATGCCGCTCTACCTGCCAATGAGTGCCGTTATGCTGTCTTTGATTTTGATTTCACCACTGATGAAAACTGCCAAAAAAGCAAGATTTTTTTCATTGCATGGGCTCCGGATACATCAAAGGTGAGAGAAAAGATGGTGTATGCCAGCTCCAAGGACAGATTCAAGAGGGAACTTGATGGCATTCAAGTTGAGTTGCAAGCAACGGATTCTAGTGAGATGAGCTTTGATATCATAAAAGCAAGGGCAATATAA 414 0.4251 MANAASGMAVTDQCKLKFQELKAKRNYRFIVFKIENFEVVVEKLGSPEETYEDFNAALPANECRYAVFDFDFTTDENCQKSKIFFIAWAPDTSKVREKMVYASSKDRFKRELDGIQVELQATDSSEMSFDIIKARAI 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02258 137 PANTHER COFILIN-RELATED 2 137 IPR017904 GO:0015629|GO:0030042
Cca02g02258 137 Pfam Cofilin/tropomyosin-type actin-binding protein 14 134 IPR002108 GO:0003779
Cca02g02258 137 Gene3D Severin 1 137 IPR029006 -
Cca02g02258 137 ProSiteProfiles ADF-H domain profile. 7 137 IPR002108 GO:0003779
Cca02g02258 137 SMART adf_2 12 137 IPR002108 GO:0003779
Cca02g02258 137 CDD ADF_cofilin_like 6 136 IPR017904 GO:0015629|GO:0030042
Cca02g02258 137 SUPERFAMILY Actin depolymerizing proteins 3 135 - -
Cca02g02258 137 PANTHER COFILIN/ACTIN-DEPOLYMERIZING FACTOR-LIKE PROTEIN 2 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02258 Cca-Chr2 43138344 43139979 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02258 K05765 - ahf:112779196 253.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02258 02 43138344 43139979 Cca06g01790 06 33256750 33258005 ECH
Cca02g02258 02 43138344 43139979 Cca02g02258 02 43138344 43139979 ECH