Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca06g01786 | ATGTTTCGTTCTGCAAGATGGAGGAGCGACAAGAACAGGGTCAAAGCAGTTTTCAAGCTGCATTTCCATGCCACCCAGGTTTTTCAATCTGGGATGGATGCACTGGTCTTGTCTATAGTTCCAGGGGACATTGGAAAACCAACTACGAGATTGGAGAAAGCTACAGTTCGAGATGGAACTTGTAGATGGGAAAATCCAGTGTATGAAACTGTCAAGTTTATTCAGGAGCCTAAGACTGGGAAAATCAGTGATAAAATTTATCATTTTTTGGTTTCAACGGGGTTACCAAAAGCTAGCTCCATTGGGGAGGTTTCTGTAAACTTAGCTGATTATGTGGAAGCCACGAAGCCCTCCTCTTTCTCTCTTCCCATCAGAATTTCTCATTGTGATTCTGTTTTGCATGTATCAATTCAGAGGCTGCAAGAAAACGGTGATCGAAGAGAAGAAAATGAATGTGAAGATGCCAAAGTAAAATACGATGATAGGAGCTCAAGGAACCAATTTAGCAACGGTGATATGGATGAAACCAGTCAAAGTTGTTCTTCTGAAGATGTGTCTGCTAAAGCAATAATCAATAGAGCTGAATTGAGTTCTAATTATAGGACATCTAGTGGCTCAGATATGACATTGTCAAGTTCTGATGACAGCTCTGGACTTGACACTCCCCGTGAAGTTGGACCTAGAAAAAAGAGCATGCAACCCAACACAAAAAGGTTTGTTCCAGACCCGACCATGCGCCATGCTTCAGAACCTCAAAACCTTTCTCTCAATGCCTCAACATCAATGCATGATGTACATCAGAGATCACACTGGGACTGGCCAGCTGGTTCGGAGCATAGGCTAAGTACTACAGAAGAAGATTCAACATATGGTTCTCGATCTCATCATAATTCTCTTCCAAAGGAAAACTCCCAACCTATAGAGATTGAAAGTCTCAAGGTTGAACTTGCTGCTTTGGCCAGGCATGTGGATGTGTCAGACTTGGAATTGCAGACCCTTAGGAAGCAAATTGTAAAGGAATGCAAAAGAGGGCAGGATCTCTCCAAGGAAATCATTGTCTTGAAAGAGGAAAGGGATGCACTCAAGACAGAATGTGATAATCTCAGGTCTTTTCAGAAACGCATGGATGAATCCAAAGGGAGAAACAGGACACAGTTGGAAGGTGGAGATCTTCATGCTCTTGTTGAAGAAATAAGACAAGAGTTGGATTATGAGAAGGGCCTAAATGCAAACCTCCGACTACAGTTAAAGAAGATGCAAGAATCTAATGCTGAACTGGTTCTTGCTGTGCAGGATCTGGATGAAATGTTGGAGCAGAAAAATAGGGACATGTGTAACCATTCCTATACTAATGAGCAGGACAAAAATTTCCAAGAGGTAAGGTTAAGCCTCTCAAAATGTGGAACTGATGATGATGAAGAACAGAAAGCATTGGAGGAGCTTGTTAAGGAGCACAGTGAAGCCAAGGAGACACACTTACTTGAGAAGAAAATAGTAGACCTCTATGGTGAAATAGAGATGTACAGGAGAGACAAAGATGAGTTAGAGATGCAGATGGAACAGCTTGCACTGGACTATGAAATATTGAAACAGGAAAACCATGGCCTTGCTTATAAGGTGGAGCAAAGCCAACTGCAAGAACAGTTGAAAATGCAGTATGAATGTTCATCTCCTCCTCCTGCAATGAATGACATTGAAACACACATCAAGAATCTGGAAAATCAACTCAAGGAACAATCAGAAGACTTCTCAAATTCTCTGGCTACCATTAAGGCACTTGAAACCCACATCAGAGGATTAGAGGAGGAAATGGAGAAACAAACACAAGGATTTGAAGCTGATCTTGAAGCAGTGATGCGTGAGAAAGTTGAGCAAGAGCAAAGAGCAATCCAAGCAGAGGAAGCCTTGAGAAAGACCAGACACAAAAATGCTAAAACTGCTGAGAGGCTTCAAGAGGAATTCCGAAGGCTCTCCATGCAAATGACCACTACATTTGATGCAAATGAGAAGGCAACCATGAAAGCATTGACAGAAGCAAGTGAAGTGCGTGCACAGAAAAGTGTACTGGAAGAGAAGCTGCATAAAGCCACGGAAGAACTAGAGTCAAGTAAAGCTGATTATGAGGAAAAACTGAACCAACTTTCCAACCAAATAGATACCTTGAAAGTTCAGATACAACAGATGTTGTTGGAAATTGAGGATAAGTCCAAGCAGCTTGAAAATCAGAAGAGGCACGAGGAACAAGTTAGTAGGAATTTATCTGATGATATCGGGTTACTAAAATCTGAGAATGTAAAGCTTAACGTAGAGATTTCGTGCTTACGTGAACAAGTAGAAGAAAAAGAAGTTTTAAGAACTGAATTGGAAGTTATGAAGAAATCAATCGAGGAATCTGAGACCCTTTTACATAAAGGAACTGTGGAAAGAAATGAACTGGTGGATACAATTGCATTGTTGAAGAAGGAGGCAGAGAAGACACTTGATGAGTTAAATAGAATGAGACATCTTAAGGATGAAAAAGAAACAGAGGTTAGAGTCTTGCAGTCAGAGTTGGAAGCCATTAGATCTCAATACAGTGACCTGAAACTGTCTCTTTCAGAGGATGAAGCTGAGAAAGAAAAACTACGAAAGCAAGTTTTCCAGCTAAAGGGTGAGTTGAAGAAGAAAGATGAAGCATTAATCAGCACTGAAAAGAGGTTAAGGGAAAGTAATGTACGCACACAACTTACCGATGCAACTAAAACAATTCCAAAGAACAAAAAAACTGCTTCAATTCCTCAGAATTCGAAGGAAATAGCCAGTCTGAAGGAGAAAATAAAAACACTCGAGGGCTTGATACAGTCAAAGGAAACTGCCTTGGAAACTTCAACAACTTCATTTTTGGAGAAAGAAAAAGAATTCCAGACCAAAATTGAGGAACTGGAGAACAGAGTGGAGGAATTCAACCGTAGTATTGCTTTGCATAAGGTTGTTCATGATAGAAGTGTTGCTACTTCCAATGAGATATCTGGACAAGTGAGAAGTACAGTTGAGCATATCAATGGTGACACATTAACTGAGTTAACATCATTGAAGGAAAGAAACAAATCAATGGAAAGTGAACTTAAGGAGATGCAAGAGAGATACTTAGAAATGAGCCTCAATTTTGCGGAGGTGGAAAGTGAAAGACAAAAGCTCGTTATGACTGTACGGAATCTTAAGAGTAACCAGAAAGGCTAA | 3219 | 0.4051 | MFRSARWRSDKNRVKAVFKLHFHATQVFQSGMDALVLSIVPGDIGKPTTRLEKATVRDGTCRWENPVYETVKFIQEPKTGKISDKIYHFLVSTGLPKASSIGEVSVNLADYVEATKPSSFSLPIRISHCDSVLHVSIQRLQENGDRREENECEDAKVKYDDRSSRNQFSNGDMDETSQSCSSEDVSAKAIINRAELSSNYRTSSGSDMTLSSSDDSSGLDTPREVGPRKKSMQPNTKRFVPDPTMRHASEPQNLSLNASTSMHDVHQRSHWDWPAGSEHRLSTTEEDSTYGSRSHHNSLPKENSQPIEIESLKVELAALARHVDVSDLELQTLRKQIVKECKRGQDLSKEIIVLKEERDALKTECDNLRSFQKRMDESKGRNRTQLEGGDLHALVEEIRQELDYEKGLNANLRLQLKKMQESNAELVLAVQDLDEMLEQKNRDMCNHSYTNEQDKNFQEVRLSLSKCGTDDDEEQKALEELVKEHSEAKETHLLEKKIVDLYGEIEMYRRDKDELEMQMEQLALDYEILKQENHGLAYKVEQSQLQEQLKMQYECSSPPPAMNDIETHIKNLENQLKEQSEDFSNSLATIKALETHIRGLEEEMEKQTQGFEADLEAVMREKVEQEQRAIQAEEALRKTRHKNAKTAERLQEEFRRLSMQMTTTFDANEKATMKALTEASEVRAQKSVLEEKLHKATEELESSKADYEEKLNQLSNQIDTLKVQIQQMLLEIEDKSKQLENQKRHEEQVSRNLSDDIGLLKSENVKLNVEISCLREQVEEKEVLRTELEVMKKSIEESETLLHKGTVERNELVDTIALLKKEAEKTLDELNRMRHLKDEKETEVRVLQSELEAIRSQYSDLKLSLSEDEAEKEKLRKQVFQLKGELKKKDEALISTEKRLRESNVRTQLTDATKTIPKNKKTASIPQNSKEIASLKEKIKTLEGLIQSKETALETSTTSFLEKEKEFQTKIEELENRVEEFNRSIALHKVVHDRSVATSNEISGQVRSTVEHINGDTLTELTSLKERNKSMESELKEMQERYLEMSLNFAEVESERQKLVMTVRNLKSNQKG | 1072 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca06g01786 | 1072 | MobiDBLite | consensus disorder prediction | 143 | 168 | - | - | |
| Cca06g01786 | 1072 | ProSiteProfiles | C2 NT-type domain profile. | 6 | 141 | IPR019448 | - | |
| Cca06g01786 | 1072 | Coils | Coil | 498 | 532 | - | - | |
| Cca06g01786 | 1072 | MobiDBLite | consensus disorder prediction | 200 | 250 | - | - | |
| Cca06g01786 | 1072 | MobiDBLite | consensus disorder prediction | 273 | 306 | - | - | |
| Cca06g01786 | 1072 | Gene3D | - | 825 | 996 | - | - | |
| Cca06g01786 | 1072 | Coils | Coil | 409 | 443 | - | - | |
| Cca06g01786 | 1072 | Pfam | N-terminal C2 in EEIG1 and EHBP1 proteins | 11 | 146 | IPR019448 | - | |
| Cca06g01786 | 1072 | Coils | Coil | 562 | 642 | - | - | |
| Cca06g01786 | 1072 | MobiDBLite | consensus disorder prediction | 169 | 184 | - | - | |
| Cca06g01786 | 1072 | Coils | Coil | 679 | 756 | - | - | |
| Cca06g01786 | 1072 | MobiDBLite | consensus disorder prediction | 143 | 184 | - | - | |
| Cca06g01786 | 1072 | Coils | Coil | 932 | 952 | - | - | |
| Cca06g01786 | 1072 | PANTHER | MYOSIN HEAVY CHAIN-RELATED PROTEIN | 6 | 1072 | - | - | |
| Cca06g01786 | 1072 | Coils | Coil | 809 | 892 | - | - | |
| Cca06g01786 | 1072 | MobiDBLite | consensus disorder prediction | 200 | 219 | - | - | |
| Cca06g01786 | 1072 | Coils | Coil | 774 | 801 | - | - | |
| Cca06g01786 | 1072 | PANTHER | MYOSIN HEAVY CHAIN-LIKE PROTEIN | 6 | 1072 | - | - | |
| Cca06g01786 | 1072 | MobiDBLite | consensus disorder prediction | 273 | 292 | - | - | |
| Cca06g01786 | 1072 | Coils | Coil | 1021 | 1069 | - | - | |
| Cca06g01786 | 1072 | Coils | Coil | 344 | 364 | - | - | |
| Cca06g01786 | 1072 | Coils | Coil | 964 | 991 | - | - | |
| Cca06g01786 | 1072 | Coils | Coil | 471 | 491 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca06g01786 | Cca-Chr6 | 33182005 | 33186857 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca06g01786 | - | - | gmx:100792602 | 1728.76 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca06g01786 | 06 | 33182005 | 33186857 | Cca06g01786 | 06 | 33182005 | 33186857 | ECH | |
| Cca02g02265 | 02 | 43185663 | 43191150 | Cca06g01786 | 06 | 33182005 | 33186857 | ECH | |
| Cca06g01786 | 06 | 33182005 | 33186857 | Cca09g02413 | 09 | 49496316 | 49501143 | PCT |