Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01704 ATGAGCACCGGTGACCTTCTCAGCATCGAACCTCTCGAGCTCAAGTTCTTCTTTGAGCTCAAGAAGCAGATCTCATGTTCTCTTCAATTGTCAAACAAGACCGATAGCTATGTAGCCTTCAAGGTGAAAACAACGAATCCCAAAAAGTATTGTGTTCGTCCCAACACCGGAGTTGTGTTGCCACGATCTACATGCGATGTTATTGTTACCATGCAAGCGCAGAAGGAAGCTCCGGCTGATATGCAATGCAAGGATAAGTTTCTTCTTCAAAGCGTAAAAGTAGAAGATGGAATCACCGCAAAGGATATCACTGCAGAAATGTTCAACAAGGAAGCGGGGCACGTGGTTGAGGAGTGCAAATTGAGAGTGCTGTATGTCTCTCCGCCTCAACCTCCGTCTCCAGTCCCAGAAGGTTCTGAGGAAGGGTCATCCCCTAGAGGTTCTGTTTCCGACAATGGAAATGTCAATGGTGCTGATTCCGCGGCGGTGAGTTCTTCACTTGGTCCTGTTTTAGGTGAACCTTTTCACTTTTTGCAGGCAAAAGCTCTTATCTCAAGGCTGACTGAAGAAAAGAATAATGCAATTCAACAAAACAACAAGCTTCGTCAGGAACTGGACCTGCTGAGACGGGAAAGCAGCAAAAGTCGTGGGGGTGTCTCGATGGTCTTTGTCATATTAATTGGTTTACTCGGCATAATTATGGGAAACACGGTAGTAGGAATGGCAAGGAGCTACTTCAAACAAGAACATGATCTTGAGAAGAGAAGAGCTGAGGCCGCTAGGATTAGGGAGAAATACCCAGATAGGATCCCGGTAATTGTGGAGAAGGCTGAAAGAAGTGACATCCCAAGTATTGACAAGAAGAAGTACCTTGTTCCTGCTGACTTGACTGTTGGACAGTTTGTATACGTGATCCGCAAAAGGATTAAATTAAGTGCAGAAAAGGCAATCTTCATATTTGTGGACAACGTCCTTCCTCCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGACGAGGATGGGTTTCTCTATGTTACGTACAGCGGCGAGAACACCTTTGGGGATCTGATTTCCATTCAGTAG 1092 0.4524 MSTGDLLSIEPLELKFFFELKKQISCSLQLSNKTDSYVAFKVKTTNPKKYCVRPNTGVVLPRSTCDVIVTMQAQKEAPADMQCKDKFLLQSVKVEDGITAKDITAEMFNKEAGHVVEECKLRVLYVSPPQPPSPVPEGSEEGSSPRGSVSDNGNVNGADSAAVSSSLGPVLGEPFHFLQAKALISRLTEEKNNAIQQNNKLRQELDLLRRESSKSRGGVSMVFVILIGLLGIIMGNTVVGMARSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLISIQ 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01704 363 Gene3D - 235 357 - -
Cca06g01704 363 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Cca06g01704 363 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Cca06g01704 363 MobiDBLite consensus disorder prediction 127 158 - -
Cca06g01704 363 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 237 - -
Cca06g01704 363 SUPERFAMILY Ubiquitin-like 244 357 IPR029071 -
Cca06g01704 363 CDD Ubl_ATG8 252 354 - -
Cca06g01704 363 Gene3D Immunoglobulins 2 130 IPR013783 -
Cca06g01704 363 SUPERFAMILY PapD-like 2 141 IPR008962 -
Cca06g01704 363 Coils Coil 184 211 - -
Cca06g01704 363 Pfam Autophagy protein Atg8 ubiquitin like 254 357 IPR004241 -
Cca06g01704 363 MobiDBLite consensus disorder prediction 143 158 - -
Cca06g01704 363 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 237 IPR016763 GO:0005789
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01704 Cca-Chr6 32323057 32331712 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01704 - - gmx:100798247 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca06g01704 06 32323057 32331712 Cca06g01704 06 32323057 32331712 ECH
Cca06g01704 06 32323057 32331712 Cca11g01615 11 39895231 39906090 PCT
Cca11g01611 11 39879376 39883554 Cca06g01704 06 32323057 32331712 PCT