Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01611 ATGAGCAGTGGGGAGCTTCTCAACATCGAACCTCTGGAACTCAAGTTCCCTTTTGAGCTCAAGAAGCAGATCTCCTCTTCTCTTCAATTGTCTAATAAGACCGATAGCTATGTAGCCTTCAAGGTGAAAACGACCAATCCCAGGAAGTATTGTGTTCGGCCCAACACTGGAATTGTCATGCCACGATCTACATGTGATGTTATGGTTACCATGCAAGCGCAGAAAGAAGCTCCGGCTGATATGCAATGCAGGGATAAGTTTCTTCTTCAGAGTGTAAAAACTGTGGATGGTACCAGTTCGAAGGATATCACTGCAGAGATGTTCAACAAGGAGGCGGGGCATGTGGTTGAGGAGTGCAAATTGAGAGTGTTATATGTTTCTCCACCTCAACCACCGTCTCCAGTCCCAGAAGGTTCTGAGGAAGGATCCTCACCAAGAGGTTCTGTTTCAGAGAATGGAAATGCCAATGGTTCCGACTTCATGCAGGCACCAAGAGGATTTACTGAACGACCAGAGGCTCAAGACCAATCTGCTGAGGCTAGAGCTCTTATCTCAAGGCTGACTGAAGAAAAGAATAACACAATTCTACAAAATAACAAGCTCCGCCAGGAACTGGAGCAACTGAAGCGGGAAAGCAACAAAAATCGCGGTGGAGTCTCATTTGTCGTTGTCGTATTAATTGGCTTAATTGGCATAATTATGGGGTATCTCATGAAGTAG 720 0.4556 MSSGELLNIEPLELKFPFELKKQISSSLQLSNKTDSYVAFKVKTTNPRKYCVRPNTGIVMPRSTCDVMVTMQAQKEAPADMQCRDKFLLQSVKTVDGTSSKDITAEMFNKEAGHVVEECKLRVLYVSPPQPPSPVPEGSEEGSSPRGSVSENGNANGSDFMQAPRGFTERPEAQDQSAEARALISRLTEEKNNTILQNNKLRQELEQLKRESNKNRGGVSFVVVVLIGLIGIIMGYLMK 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01611 239 SUPERFAMILY PapD-like 2 141 IPR008962 -
Cca11g01611 239 PIRSF VAMP_assoc_prot 1 239 IPR016763 GO:0005789
Cca11g01611 239 MobiDBLite consensus disorder prediction 143 161 - -
Cca11g01611 239 Pfam MSP (Major sperm protein) domain 7 111 IPR000535 -
Cca11g01611 239 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
Cca11g01611 239 Coils Coil 170 218 - -
Cca11g01611 239 PANTHER VESICLE-ASSOCIATED PROTEIN 1-2-LIKE 1 239 - -
Cca11g01611 239 Gene3D Immunoglobulins 2 130 IPR013783 -
Cca11g01611 239 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 1 239 IPR016763 GO:0005789
Cca11g01611 239 MobiDBLite consensus disorder prediction 127 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01611 Cca-Chr11 39879376 39883554 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01611 - - gmx:100527687 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01611 11 39879376 39883554 Cca11g01611 11 39879376 39883554 ECH
Cca11g01611 11 39879376 39883554 Cca06g01704 06 32323057 32331712 PCT