Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca11g01615 ATGGGAATAATCGGTTGTCAAAGCAATGGATCCATGGATGATACCAAGTTCAGCAAACCCATGCCATGGATCGGCATATACATAGCAGCAGCATCTCTTGCTTGCCTCATAGCAATAGCTGCAGATCTCGTACATGGAATCCGTGGTCGAAAGCTTTGGTTCCCTTGCAAATTCTTCTGCCTCAACGCCACTTCCTTGGCCCTTATAGCTGTTGCAGTGAAGTTATCGGTGGATCTCAACACCCCCATGCCTCACCGCAACGATCAGCTTTCAAAACTCAGCAGCAGCGCCTTGATCTGCACAATCATGGCCAATTCCATGCCCACTCTCGGCATCACGGAGAACAAAGACACCATGATGAACCTCATGGCCATGGCCATCCTCGTTGTCACCATGATTGTCAACATCTGCATCCAGTTTGTTACCGGCGTTATCTATGTCTTCTGGGTGGAACATGGTGTCATCATGCTCATCATGCTCATTTTGTTGATGACCATGACCTCCTCAGCCATAAGTATTCCAAAGATGAAGCACTATTTTGAGCTGAAGTATAAGATGAATGAAGAGGCACTTAAGGAAAGTTCAACCCTATTTAGGGAGGAGGAGAATCAAATCGTGAACAGACTCAGAGATCAACTAATGAAATTTTGGATGATGACTCACACAAGCAGCCCTCAATTTGTTCTTGGAAGGTCTTACCTTATGCCATGGTCGTTTGAGTTTTGCACCGGTGACTGTGACTACAAGTGGTCCATCATCTTGATTCTCGTAGTTCAGGTTGCTGCGGTGGTGTTCGGTACTATTGCTCCTGCTTTTAGATGGTTCGTTGTCATAAGTTATAGGTGCCCAAGTGCGAGGAATGGGAGCTGCAAGAGAAAGTTTCACGTAGAAGGGTACTGGACCACAAAGCTAGTGAATATCAAAGAAAGTCCTCTTGGTTTTCGAATTCATAATAGGCACTACAGAAAGCTGGCTCATGATGCAAAACTACTTCTATTGTGTTTCTGTATTAAACTTCAGAAGTTGAAATCCAAATTTGTTTCTAGTGTCTCAAGGGTTAGCTCGGGAACAGAGTCAAGGCCTGGCCCAAAGCTTGATTTGAGGCGTTTTGTTTTGCATCTTGAAGGTGAGGAAGAATTCGTTGAGGTGATGATGAATCATAATCGTGATGCCACTAATCACTGGGTTGAAGTAGGAGAAAAGAAGCAGCCAAAACTTCTCATTGAATTATTGGAGAAGTGTTCTTTCTTGCAAGGGTTCAAGGGAGTTGGAGCATTTGACAGTGACCAAATTCTTTCTTTACATGCAGTAGAAGCTCCCCATAATTGGTCACTTCCTCTGGTGACACTAGCTAGCATTGCAGTGGCCCTTCCAAACATCAATAGGAGTTCAGTCAAAAAATTGATTAGTACAATAAATGAAGGGCTACCCTTTGTAAAGTTCATAGAAAATAACCTTGACAAAGAAAGAGATTTGTTTAAACTCGGAAAGGCTGCAGAAATTGTGTGGCTTGGAGTTGATCTATATGGCAAGTGGCTAGATGTGGATCTTCGTGAGCTCTCACTTCAAGATAAGTGCCCCAAAGAGACACTTGAGAAACTAGCTGATGCTGCAAAAATCAGTTATGAGAAATTTAAAGTCAAATATAAGCACATATGCATAAAGTTAAGCCCTTCATTATGGCCCAGCAAAGTATCGGCATCTCACACTATGTACAGAATATGCAAAACTGCTCTCTTAAATCATGAACTCATAAGAGACAACACGAATGAGAGGTTGTTCGAAGCACTTACACTGATGATTTCTGATATATTGGGTGCATGTCTCACCAACTTACCCCTTGTTATATCCAACAAGTGTTTGAATAGCACCATTGAAGAGAGGGAGGATACTGTAAGACATGCGGTTTACATTCTTGGTAAGACCAAGAAGATTATAGAAATGCTAGAAAAGAGAGCATTTCCCCACGTGGATTTCTGCCGAGGGACGTTCATTGAAGATTGGCGTTTAATGCATAAGCAAAAGAGTCTTTTGTACTTTGTTCCATCTTCACCGGAGAATGACACATATACATCTCCTCACAAATCAATTTTCAGAGTTCAAATTGGAAGAATGACAAAGAGTTACTTCAAACAAGAGCATGATCTTGAGAAGAGAAGAGCTGAGGCTGCTAGGATTAGGGAGAAATACCCAGACCGTATCCCGGTGATTGTGGAGAAGGCAGAAAGAAGTGATATCCCAAGTATTGACAAGAAAAAGTACCTTGTACCTGCTGATCTGACAGTTGGACAGTTTGTCTATGTTATCCGCAAAAGGATTAAATTAAGCGCAGAAAAGGCAATCTTTATCTTTGTGGACAATGTCCTTCCACCTACAGGAGCAATTATGTCTGCCATATATGATGAGAAGAAGGATGAGGATGGGTTTCTTTATGTTACATACAGTGGGGAGAATACCTTCGGGGATCTGACTTCCCACTAG 2481 0.4236 MGIIGCQSNGSMDDTKFSKPMPWIGIYIAAASLACLIAIAADLVHGIRGRKLWFPCKFFCLNATSLALIAVAVKLSVDLNTPMPHRNDQLSKLSSSALICTIMANSMPTLGITENKDTMMNLMAMAILVVTMIVNICIQFVTGVIYVFWVEHGVIMLIMLILLMTMTSSAISIPKMKHYFELKYKMNEEALKESSTLFREEENQIVNRLRDQLMKFWMMTHTSSPQFVLGRSYLMPWSFEFCTGDCDYKWSIILILVVQVAAVVFGTIAPAFRWFVVISYRCPSARNGSCKRKFHVEGYWTTKLVNIKESPLGFRIHNRHYRKLAHDAKLLLLCFCIKLQKLKSKFVSSVSRVSSGTESRPGPKLDLRRFVLHLEGEEEFVEVMMNHNRDATNHWVEVGEKKQPKLLIELLEKCSFLQGFKGVGAFDSDQILSLHAVEAPHNWSLPLVTLASIAVALPNINRSSVKKLISTINEGLPFVKFIENNLDKERDLFKLGKAAEIVWLGVDLYGKWLDVDLRELSLQDKCPKETLEKLADAAKISYEKFKVKYKHICIKLSPSLWPSKVSASHTMYRICKTALLNHELIRDNTNERLFEALTLMISDILGACLTNLPLVISNKCLNSTIEEREDTVRHAVYILGKTKKIIEMLEKRAFPHVDFCRGTFIEDWRLMHKQKSLLYFVPSSPENDTYTSPHKSIFRVQIGRMTKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPSIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYDEKKDEDGFLYVTYSGENTFGDLTSH 826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca11g01615 826 PANTHER PROTEIN, PUTATIVE-RELATED 1 680 - -
Cca11g01615 826 Pfam Autophagy protein Atg8 ubiquitin like 718 821 IPR004241 -
Cca11g01615 826 PANTHER PROTEIN, PUTATIVE-RELATED 1 680 - -
Cca11g01615 826 SUPERFAMILY Ubiquitin-like 707 821 IPR029071 -
Cca11g01615 826 CDD Ubl_ATG8 716 818 - -
Cca11g01615 826 Gene3D - 697 821 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca11g01615 Cca-Chr11 39895231 39906090 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca11g01615 - - gmx:100794740 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca11g01615 11 39895231 39906090 Cca11g01615 11 39895231 39906090 ECH
Cca06g01704 06 32323057 32331712 Cca11g01615 11 39895231 39906090 PCT