Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01257 ATGGGCCGTGCCTCCACCATCCCACATGGCCCACATCAAAACCTCTCTATATATACTCCCTTCATCTTAACACTTTTCTCCAAAACCATCCAACAAGGGAAACCAAATATTATTCCATTTTTCTCTTTTTCCTTTCCCACATTCATTCCCCATTTTTCAACCATGCCTGCTTCATCTTCAACTCATTTCTCCCCCACTTTCCTCACACTATGCTTCTTCCAATTCCTAGCAGGTTCCTATTCAACGACATTTACAATAGTGAACAAGTGTAGCTACACAGTTTGGCCCGGCATTCTATCCGGCGCCGGGACCTCGCCGCTCTCCACCACCGGCTTCGCTCTTCAGCCCGGCGAGTCCAACGTCGTGGCCGTGCCGCCAGCCTGGTCCGGCCGCCTCTGGGGGCGGACGTTCTGCTCGCAGGACGCAACCGGAAAATTCACTTGCGTCACCGGAGACTGCGGCTCCTCCGCCATAGAATGCAACGGCAGAGGAGCTGCCCCGCCGGCCACGCTTGCGGAGTTCACTCTGAACGGCGCCGGAGGGCTTGATTTCTTCGACGTGAGCCTGGTGGACGGGTACAACCTCCCGATGGTGGTGGAGCCGCAGGGCGGAAGCGGCGGCGGAAACTGCAGCGCGACGGGGTGCGTGGTGGACCTGAACACGCCGTGTCCGACGGAGCTAAAGGTGATGAGCAGCGGAGAGGGCGTGGCGTGCAAAAGCGCGTGCGAGGCTTTCGATGATCCACAATATTGCTGCAGTGGCGCTTACGCGACGCCTGACACATGCAAACCCAGCTCCTACTCGCAGTTCTTCAAGAGCGCCTGTCCACGCGCTTATAGTTACGCCTACGACGATGGCTCCAGCACCTTCACTTGCGCCTCTGCTGATTACACCATCACCTTCTGTCCCGCACCCTCCACAAGTTCGATTAAATCGGGGAACGAGAAATATCCAACGGCGGTGGAGACTTCGGGTGGTAACGTGGACGTGAGAGCGAACAATGTTATGGCGGTGATTGTTGGTGTTTTGGTGGCATTTGTGGCAACTCAATTAGGTGCTAGTTCACTGCCAATGTCGCATTAA 1083 0.5577 MGRASTIPHGPHQNLSIYTPFILTLFSKTIQQGKPNIIPFFSFSFPTFIPHFSTMPASSSTHFSPTFLTLCFFQFLAGSYSTTFTIVNKCSYTVWPGILSGAGTSPLSTTGFALQPGESNVVAVPPAWSGRLWGRTFCSQDATGKFTCVTGDCGSSAIECNGRGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPMVVEPQGGSGGGNCSATGCVVDLNTPCPTELKVMSSGEGVACKSACEAFDDPQYCCSGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGSSTFTCASADYTITFCPAPSTSSIKSGNEKYPTAVETSGGNVDVRANNVMAVIVGVLVAFVATQLGASSLPMSH 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01257 360 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 67 323 - -
Cca06g01257 360 Pfam Thaumatin family 88 303 IPR001938 -
Cca06g01257 360 SUPERFAMILY Osmotin, thaumatin-like protein 82 303 IPR037176 -
Cca06g01257 360 CDD TLP-PA 83 302 - -
Cca06g01257 360 ProSiteProfiles Thaumatin family profile. 81 303 IPR001938 -
Cca06g01257 360 PRINTS Pathogenesis-related protein signature 293 302 IPR001938 -
Cca06g01257 360 PRINTS Pathogenesis-related protein signature 183 199 IPR001938 -
Cca06g01257 360 PRINTS Pathogenesis-related protein signature 131 142 IPR001938 -
Cca06g01257 360 PRINTS Pathogenesis-related protein signature 83 95 IPR001938 -
Cca06g01257 360 SMART tha2 84 303 IPR001938 -
Cca06g01257 360 Gene3D Thaumatin 82 303 IPR037176 -
Cca06g01257 360 PANTHER OS03G0233200 PROTEIN 67 323 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01257 Cca-Chr6 27059966 27062149 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca06g01257 63 346 Receptor kinase-like Gene Family AT5G38280 50.000 3.03e-90 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01257 - - gmx:100806478 567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00373 05 8189698 8191992 Cca06g01257 06 27059966 27062149 ECH
Cca07g00262 07 3330045 3333737 Cca06g01257 06 27059966 27062149 ECH
Cca06g01257 06 27059966 27062149 Cca06g01257 06 27059966 27062149 ECH