Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00262 ATGGATCAGTTGACACTACCATTTCCATTCTCACTAACACTGCATCTATTACTATTAGCATCAGGTGTAGCATCAACAACAACGTTCACCGTCATTAACAAATGCGACTACACGGTGTGGCCAGGCATTCTCTCAAACGCCGGAGTTCCGCCGCTTCCGGTCACCGGTTTCGCTCTCCAAACCGGCGAGTCCAAAACCATAACCGCTCCCACCTCTTGGGGCGGCCGCTTCTGGGGCCGCACTCTCTGCAGCCAAGACTCGGCCGGAAAATTCTCCTGCCTGACGGGCGACTGCGGCTCGGGGAAGATGGAATGCGCGGGCAATGGCGCGGCGCCGCCGGCAACGCTGGGCGAGTTCAGCCTGGACGGCGAGGGAGGCCTGGATTTCTTCGACGTGAGCCTGGTGGACGGGTACAACGTGGCGATGTTGGTGGCGCCTGAGGGGGGCTCCGGCGAGAGGTGCACGAGCACGGGGTGCGTGGGGGACTTGAACAGCGCGTGTCCTTCGGAGCTTAGGGTTGAGAGCGTGGAGGGGAAAGGGAGCGTGGCGTGTAAGAGCGCGTGCGAGGCGTTCGGGACAGCGCAGTATTGCTGCAGAGGCGCGTATGCGTCGCCCAACACTTGCAAGCCTTCGGCGTACTCGCAGATTTTCAAGAGCGCTTGCCCACGCGCCTACAGCTACGCGTACGATGACAGGACCAGCACGTTCACGTGCGCTTCCTCTGCGGATTACACCATCACTTTTTGTCCTTCCGCTAACGCTAACCCCAGTCAGAAATCATGGCAGGGGCAAAACCCGAAATCAGATAGCAGTGGTTCTGCGTCGCCAGAGCTTAACAACAGCACAATGGTATATGTAGGTGCCATGGATCAAAGTGAAATATCCTGGTCGGCAGGTACACATGTATGGGAATCTCAAGCCATTGCTGCCTTTGTCAGTATCACCATGGCTTTTTGGCTCTTGTGCCACCTCTACTAA 978 0.5746 MDQLTLPFPFSLTLHLLLLASGVASTTTFTVINKCDYTVWPGILSNAGVPPLPVTGFALQTGESKTITAPTSWGGRFWGRTLCSQDSAGKFSCLTGDCGSGKMECAGNGAAPPATLGEFSLDGEGGLDFFDVSLVDGYNVAMLVAPEGGSGERCTSTGCVGDLNSACPSELRVESVEGKGSVACKSACEAFGTAQYCCRGAYASPNTCKPSAYSQIFKSACPRAYSYAYDDRTSTFTCASSADYTITFCPSANANPSQKSWQGQNPKSDSSGSASPELNNSTMVYVGAMDQSEISWSAGTHVWESQAIAAFVSITMAFWLLCHLY 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00262 325 PANTHER OS03G0233200 PROTEIN 4 276 IPR001938 -
Cca07g00262 325 PANTHER BNAA02G17480D PROTEIN 4 276 - -
Cca07g00262 325 MobiDBLite consensus disorder prediction 256 276 - -
Cca07g00262 325 SMART tha2 29 250 IPR001938 -
Cca07g00262 325 CDD TLP-PA 28 249 - -
Cca07g00262 325 ProSitePatterns Thaumatin family signature. 89 105 IPR017949 -
Cca07g00262 325 Pfam Thaumatin family 33 250 IPR001938 -
Cca07g00262 325 Gene3D Thaumatin 27 250 IPR037176 -
Cca07g00262 325 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Cca07g00262 325 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Cca07g00262 325 PRINTS Pathogenesis-related protein signature 128 144 IPR001938 -
Cca07g00262 325 PRINTS Pathogenesis-related protein signature 240 249 IPR001938 -
Cca07g00262 325 ProSiteProfiles Thaumatin family profile. 26 250 IPR001938 -
Cca07g00262 325 SUPERFAMILY Osmotin, thaumatin-like protein 27 251 IPR037176 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00262 Cca-Chr7 3330045 3333737 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00262 10 268 Receptor kinase-like Gene Family AT5G38280 51.119 2.22e-89 279
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00262 - - gmx:100780102 538.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00262 07 3330045 3333737 Cca06g01257 06 27059966 27062149 ECH
Cca07g00262 07 3330045 3333737 Cca07g00262 07 3330045 3333737 ECH