Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00373 ATGGCTCCCCATTGTTTCTCCATTCACATTGCTCTCATATTGCTTCTCCTTTGCAAAGGTGCATCGGGAGCCACGTTTACTCTAATCAACAAATGTGATTACACGGTGTGGCCCGGGATTTTGGCCAATGCAGGAAGTTCCGGGTTGGACTCAACCGGGTTCGAGCTCCGACCCGGTGGGTCGCGGAGCTTCCGCACACCGCCCAATTGGTCCGGAAGATTCTGGGGCCGAACCGGGTGCAACTTCGACCCGAATACCCAAGAGGGTAGTTGCACCACAGGGGATTGCGGGTCCAACCAAGTCCAATGCAACGGGGGCGGGGCAAACCCGCCAGCCACGTTGGCCGAGTTCACAATCGGGTCGGGTTCGGGTGCCCAAGATTTTTATGACGTAAGCCTCGTTGATGGTTACAACTTACCCATGCTTGTGGACCCCAGTGGCGGATCGGGTGCGTGCGGGTCCACCGGGTGCATTGCGGACCTGAACCAACGGTGCCCGAACGAGCTGCGCGTGGCGGACCGCGGCGCGTGTAGGAGCGCGTGCGAGGCGTTCCAGAGCCCCGAGTATTGCTGCAGCGGCGCGTACGCCTCACCGGCGACTTGCAAGCCTTCGGTGTACTCGCAGATATTCAAATCCGTATGTCCCAAATCGTATAGCtacgcgtacgacgacgctacgagtacgtttacgtgtacgGGAGCTGATTATACGATCACATTCTGCCCTTCGACCACAAGCCAAAAATCTGCAAGAGATTCACCACCTCCTCCTTCAGGAATGGGGTCAGAAACAGGGACAGGGGAGATGCCGTTGATAGTTAATAGTCCATGGTTTCCCAACTTCTTCACTGGACTCTCATCCAAATCTCACTCTTGCCCCTTGCCACTCATCGCTACTCTCACTATGCTACTCTTCTTCTTTTTGCAATACTCATAG 936 0.5342 MAPHCFSIHIALILLLLCKGASGATFTLINKCDYTVWPGILANAGSSGLDSTGFELRPGGSRSFRTPPNWSGRFWGRTGCNFDPNTQEGSCTTGDCGSNQVQCNGGGANPPATLAEFTIGSGSGAQDFYDVSLVDGYNLPMLVDPSGGSGACGSTGCIADLNQRCPNELRVADRGACRSACEAFQSPEYCCSGAYASPATCKPSVYSQIFKSVCPKSYSYAYDDATSTFTCTGADYTITFCPSTTSQKSARDSPPPPSGMGSETGTGEMPLIVNSPWFPNFFTGLSSKSHSCPLPLIATLTMLLFFFLQYS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00373 311 Gene3D Thaumatin 24 242 IPR037176 -
Cca05g00373 311 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Cca05g00373 311 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Cca05g00373 311 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Cca05g00373 311 PRINTS Pathogenesis-related protein signature 232 241 IPR001938 -
Cca05g00373 311 SMART tha2 26 242 IPR001938 -
Cca05g00373 311 PANTHER THAUMATIN-LIKE PROTEIN 1 14 255 - -
Cca05g00373 311 Pfam Thaumatin family 30 242 IPR001938 -
Cca05g00373 311 SUPERFAMILY Osmotin, thaumatin-like protein 24 243 IPR037176 -
Cca05g00373 311 PANTHER OS03G0233200 PROTEIN 14 255 IPR001938 -
Cca05g00373 311 ProSiteProfiles Thaumatin family profile. 23 242 IPR001938 -
Cca05g00373 311 CDD TLP-PA 25 241 - -
Cca05g00373 311 MobiDBLite consensus disorder prediction 244 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00373 Cca-Chr5 8189698 8191992 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00373 6 273 Receptor kinase-like Gene Family AT5G38280 43.929 1.47e-73 237
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00373 - - gmx:100786772 596.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00373 05 8189698 8191992 Cca06g01257 06 27059966 27062149 ECH
Cca05g00373 05 8189698 8191992 Cca05g00373 05 8189698 8191992 ECH