Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca06g01165 ATGGGTTTTCTGGAACTAATGGAGGTGGCGTCTATGCCAGTTATTCAAGTCCTACTTATCAGTGCATTGGGTGCACTCATGGCAACTGAATATTTCAGCAATCTTCTTTCACCAGACACTCGCAAAGCCTTGAACAAGATTGTGTTCCTTGTATTCACTCCTTCGCTCGTCTTCTCCAGCTTCGCCAAGAGTGTTTCACTTGAAGACATGATATCATGGTGGTTTATGCCCGTTAACGTTGGACTTACCTTCTTAATTGGAGGGATTATAGGATGGATACTTGTAAAATTACTGAAGCCTAATTTGAAAGTGGAAGGTCTTATTATTGCTGCATGTTCATCAGGAAATATGGGTAACCTTCCTATTGTAATCATCCCTGCTATCTGTGATGAGAAGGGAGGACCATTTGGTGCACGTGATGTTTGCCGCAATAATGCACTCTCTTATGCATCTTTCTCTATGGCTCTTGGTGGCGTCTTCATCTGGACCTACACTTTCCAAGTGATAAGAAGCAGATCTATGAAATTTAAGGCAGTTGAGGCTGCTAAGATCTTAAAGGTTCCCAACAGAGATCTTGATGCTAATGAAGAAACTCACCTTCTCAAGGATAAAGACAGTGAAAACACAATAGAAGAGCCACCATCAACTTATATTGGTGACACTGAAAACCAAATTGTAAGAATTGTAGACCATGATCAGTTCAATGCACCGAATAAGGGGACAGGATCTTTTTGGCATAGAATGGTGGAAGTTGTGAGCCATCTTGTGGCAGAACTAGTGTCACCACCAGTAATTGCAACATTTTTTGGTTTCCTCTTTGGTGCGGTTGGATGGTTAAGGAACATAATAGTCGGAGACAATGCTCCACTGCATGTCATCCAGGACACTCTTCAATTACTTGGGAATGGTACCATTCCTTGCATCACCCTTTTGCTTGGTGGTAACCTCACTCAAGGCTTGAAATCATCAAGTGTCAAACCATTGACCCTCATCAGCATCATTATTGCTCGACTTTTCGTACTACCTGTTATTGGATTCTTTATTGTAAGAGAAGCTGCAAAGTTGGGCTTACTCCCTGTTGATCCTTTATTTCAGTATGTCCTAGTGATGCAGTATGCCATGCCACCGGCTATGAATATTAGTACCATGGCTCAGCTGTTTGATGTAGGAAATGAAGAGTGTTCAGTTATCCTCTTGTGGACATATAGTGCTGCAGCCATAGCACTCACTACCTGGTCAACATTCCTCTTGTGGGCATTGTCTTAA 1266 0.4218 MGFLELMEVASMPVIQVLLISALGALMATEYFSNLLSPDTRKALNKIVFLVFTPSLVFSSFAKSVSLEDMISWWFMPVNVGLTFLIGGIIGWILVKLLKPNLKVEGLIIAACSSGNMGNLPIVIIPAICDEKGGPFGARDVCRNNALSYASFSMALGGVFIWTYTFQVIRSRSMKFKAVEAAKILKVPNRDLDANEETHLLKDKDSENTIEEPPSTYIGDTENQIVRIVDHDQFNAPNKGTGSFWHRMVEVVSHLVAELVSPPVIATFFGFLFGAVGWLRNIIVGDNAPLHVIQDTLQLLGNGTIPCITLLLGGNLTQGLKSSSVKPLTLISIIIARLFVLPVIGFFIVREAAKLGLLPVDPLFQYVLVMQYAMPPAMNISTMAQLFDVGNEECSVILLWTYSAAAIALTTWSTFLLWALS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca06g01165 421 Pfam Membrane transport protein 10 412 IPR004776 GO:0016021|GO:0055085
Cca06g01165 421 PANTHER AUXIN EFFLUX CARRIER FAMILY PROTEIN 1 420 - -
Cca06g01165 421 PANTHER - 1 420 IPR045033 GO:0080162
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca06g01165 Cca-Chr6 26038404 26048348 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca06g01165 K24139 - gmx:100792072 724.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00209 07 2669740 2677423 Cca06g01165 06 26038404 26048348 ECH
Cca06g01165 06 26038404 26048348 Cca06g01165 06 26038404 26048348 ECH
Cca06g01165 06 26038404 26048348 Cca11g00980 11 21188657 21208115 PCT